Hb_010598_010

Information

Type -
Description -
Location Contig10598: 48068-49937
Sequence    

Annotation

kegg
ID pop:POPTR_0013s05860g
description POPTRDRAFT_571247; hypothetical protein
nr
ID XP_012070410.1
description PREDICTED: ankyrin-1-like [Jatropha curcas]
swissprot
ID P16157
description Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3
trembl
ID A0A067KXH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02688 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010598_010 0.0 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
2 Hb_004096_010 0.1074386192 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
3 Hb_072997_010 0.11615715 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
4 Hb_009070_030 0.1297396018 - - PREDICTED: mechanosensitive ion channel protein 10 [Jatropha curcas]
5 Hb_055440_010 0.1339817644 - - protein binding protein, putative [Ricinus communis]
6 Hb_001002_090 0.1341515222 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
7 Hb_001288_020 0.1401867351 - - -
8 Hb_042083_060 0.1475068858 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
9 Hb_000086_720 0.1476533833 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
10 Hb_009767_030 0.1478350537 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
11 Hb_013358_030 0.1480191961 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
12 Hb_010164_020 0.1555093378 - - PREDICTED: abscisate beta-glucosyltransferase-like [Jatropha curcas]
13 Hb_001158_110 0.1628855879 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
14 Hb_001454_290 0.166187442 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
15 Hb_001776_070 0.1688838537 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
16 Hb_000187_110 0.1693843518 - - PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]
17 Hb_000161_230 0.1694003081 - - lactoylglutathione lyase, putative [Ricinus communis]
18 Hb_008554_090 0.1699788418 - - zinc finger protein, putative [Ricinus communis]
19 Hb_003768_110 0.1722508179 - - hypothetical protein POPTR_0004s12230g [Populus trichocarpa]
20 Hb_001416_170 0.1730963506 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_010598_010 Hb_010598_010 Hb_004096_010 Hb_004096_010 Hb_010598_010--Hb_004096_010 Hb_072997_010 Hb_072997_010 Hb_010598_010--Hb_072997_010 Hb_009070_030 Hb_009070_030 Hb_010598_010--Hb_009070_030 Hb_055440_010 Hb_055440_010 Hb_010598_010--Hb_055440_010 Hb_001002_090 Hb_001002_090 Hb_010598_010--Hb_001002_090 Hb_001288_020 Hb_001288_020 Hb_010598_010--Hb_001288_020 Hb_004096_010--Hb_072997_010 Hb_001862_160 Hb_001862_160 Hb_004096_010--Hb_001862_160 Hb_001269_120 Hb_001269_120 Hb_004096_010--Hb_001269_120 Hb_004096_010--Hb_055440_010 Hb_009767_030 Hb_009767_030 Hb_004096_010--Hb_009767_030 Hb_072997_010--Hb_055440_010 Hb_072997_010--Hb_001002_090 Hb_072997_010--Hb_009767_030 Hb_072997_010--Hb_001288_020 Hb_042083_060 Hb_042083_060 Hb_009070_030--Hb_042083_060 Hb_008554_090 Hb_008554_090 Hb_009070_030--Hb_008554_090 Hb_002110_060 Hb_002110_060 Hb_009070_030--Hb_002110_060 Hb_009070_030--Hb_001002_090 Hb_009070_030--Hb_055440_010 Hb_055440_010--Hb_001002_090 Hb_004984_020 Hb_004984_020 Hb_055440_010--Hb_004984_020 Hb_006834_010 Hb_006834_010 Hb_055440_010--Hb_006834_010 Hb_000979_080 Hb_000979_080 Hb_055440_010--Hb_000979_080 Hb_001002_090--Hb_000979_080 Hb_000187_110 Hb_000187_110 Hb_001002_090--Hb_000187_110 Hb_001002_090--Hb_009767_030 Hb_001776_070 Hb_001776_070 Hb_001002_090--Hb_001776_070 Hb_003413_020 Hb_003413_020 Hb_001288_020--Hb_003413_020 Hb_001158_110 Hb_001158_110 Hb_001288_020--Hb_001158_110 Hb_000086_720 Hb_000086_720 Hb_001288_020--Hb_000086_720 Hb_001005_170 Hb_001005_170 Hb_001288_020--Hb_001005_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0179757 1.80296 5.50332 4.56797 0 0.0567095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.123185 0.161498 0.0600548 5.87535 0.0668079

CAGE analysis