Hb_001288_020

Information

Type -
Description -
Location Contig1288: 31903-32438
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001288_020 0.0 - - -
2 Hb_003413_020 0.0951397001 - - -
3 Hb_001158_110 0.1099854449 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
4 Hb_000086_720 0.123356017 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
5 Hb_072997_010 0.1276499395 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
6 Hb_001005_170 0.1398013969 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
7 Hb_010598_010 0.1401867351 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
8 Hb_001532_060 0.1409161968 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
9 Hb_004096_010 0.1445392724 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
10 Hb_009070_030 0.1460883719 - - PREDICTED: mechanosensitive ion channel protein 10 [Jatropha curcas]
11 Hb_004703_010 0.1490720633 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
12 Hb_001002_090 0.1491038135 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
13 Hb_009767_030 0.1606612219 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
14 Hb_055440_010 0.162282275 - - protein binding protein, putative [Ricinus communis]
15 Hb_002157_100 0.1681226611 - - -
16 Hb_021888_010 0.1688196528 - - PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Jatropha curcas]
17 Hb_003768_110 0.1772629227 - - hypothetical protein POPTR_0004s12230g [Populus trichocarpa]
18 Hb_001862_160 0.1816781886 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
19 Hb_002110_060 0.1853887094 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
20 Hb_008554_090 0.1875802892 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001288_020 Hb_001288_020 Hb_003413_020 Hb_003413_020 Hb_001288_020--Hb_003413_020 Hb_001158_110 Hb_001158_110 Hb_001288_020--Hb_001158_110 Hb_000086_720 Hb_000086_720 Hb_001288_020--Hb_000086_720 Hb_072997_010 Hb_072997_010 Hb_001288_020--Hb_072997_010 Hb_001005_170 Hb_001005_170 Hb_001288_020--Hb_001005_170 Hb_010598_010 Hb_010598_010 Hb_001288_020--Hb_010598_010 Hb_002157_100 Hb_002157_100 Hb_003413_020--Hb_002157_100 Hb_008080_030 Hb_008080_030 Hb_003413_020--Hb_008080_030 Hb_004703_010 Hb_004703_010 Hb_003413_020--Hb_004703_010 Hb_001922_020 Hb_001922_020 Hb_003413_020--Hb_001922_020 Hb_003413_020--Hb_001005_170 Hb_001158_110--Hb_000086_720 Hb_021888_010 Hb_021888_010 Hb_001158_110--Hb_021888_010 Hb_000187_110 Hb_000187_110 Hb_001158_110--Hb_000187_110 Hb_001002_090 Hb_001002_090 Hb_001158_110--Hb_001002_090 Hb_001158_110--Hb_072997_010 Hb_000086_720--Hb_000187_110 Hb_000086_720--Hb_001002_090 Hb_000086_720--Hb_021888_010 Hb_000086_720--Hb_010598_010 Hb_055440_010 Hb_055440_010 Hb_072997_010--Hb_055440_010 Hb_004096_010 Hb_004096_010 Hb_072997_010--Hb_004096_010 Hb_072997_010--Hb_001002_090 Hb_072997_010--Hb_010598_010 Hb_009767_030 Hb_009767_030 Hb_072997_010--Hb_009767_030 Hb_001862_160 Hb_001862_160 Hb_001005_170--Hb_001862_160 Hb_000656_120 Hb_000656_120 Hb_001005_170--Hb_000656_120 Hb_001005_170--Hb_004096_010 Hb_000563_180 Hb_000563_180 Hb_001005_170--Hb_000563_180 Hb_010598_010--Hb_004096_010 Hb_009070_030 Hb_009070_030 Hb_010598_010--Hb_009070_030 Hb_010598_010--Hb_055440_010 Hb_010598_010--Hb_001002_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.111764 0.36841 0.185812 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.350588 0

CAGE analysis