Hb_001005_170

Information

Type -
Description -
Location Contig1005: 187732-189413
Sequence    

Annotation

kegg
ID rcu:RCOM_1444980
description ATP binding protein, putative (EC:1.3.1.74 2.7.11.22)
nr
ID XP_012067369.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
swissprot
ID Q9ZRF9
description Probable LRR receptor-like serine/threonine-protein kinase RPK1 OS=Arabidopsis thaliana GN=RPK1 PE=1 SV=1
trembl
ID A0A067L3R4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26886 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lrr receptor-like serine threonine-protein kinase rpk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001005_170 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
2 Hb_001288_020 0.1398013969 - - -
3 Hb_001862_160 0.142846628 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
4 Hb_000656_120 0.143287006 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
5 Hb_004096_010 0.1479224488 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
6 Hb_003413_020 0.15242199 - - -
7 Hb_000563_180 0.1547018479 - - PREDICTED: J protein JJJ2 [Jatropha curcas]
8 Hb_003226_060 0.1584818433 - - Pectinesterase-2 precursor, putative [Ricinus communis]
9 Hb_000397_170 0.1623660578 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005306_030 0.1629557381 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
11 Hb_072997_010 0.1633765079 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
12 Hb_001754_100 0.1657813674 - - PREDICTED: peroxidase 5-like [Jatropha curcas]
13 Hb_185830_090 0.1667166526 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003878_020 0.167054281 - - Epidermis-specific secreted glycoprotein EP1 precursor, putative [Ricinus communis]
15 Hb_001159_220 0.1704419717 - - ESC, putative [Ricinus communis]
16 Hb_002157_100 0.1707668501 - - -
17 Hb_007017_110 0.1747384817 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
18 Hb_008143_050 0.1750558919 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]
19 Hb_001989_040 0.1752744873 - - PREDICTED: neurofilament heavy polypeptide [Jatropha curcas]
20 Hb_011849_030 0.1804571019 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001005_170 Hb_001005_170 Hb_001288_020 Hb_001288_020 Hb_001005_170--Hb_001288_020 Hb_001862_160 Hb_001862_160 Hb_001005_170--Hb_001862_160 Hb_000656_120 Hb_000656_120 Hb_001005_170--Hb_000656_120 Hb_004096_010 Hb_004096_010 Hb_001005_170--Hb_004096_010 Hb_003413_020 Hb_003413_020 Hb_001005_170--Hb_003413_020 Hb_000563_180 Hb_000563_180 Hb_001005_170--Hb_000563_180 Hb_001288_020--Hb_003413_020 Hb_001158_110 Hb_001158_110 Hb_001288_020--Hb_001158_110 Hb_000086_720 Hb_000086_720 Hb_001288_020--Hb_000086_720 Hb_072997_010 Hb_072997_010 Hb_001288_020--Hb_072997_010 Hb_010598_010 Hb_010598_010 Hb_001288_020--Hb_010598_010 Hb_000979_070 Hb_000979_070 Hb_001862_160--Hb_000979_070 Hb_001862_160--Hb_004096_010 Hb_001269_120 Hb_001269_120 Hb_001862_160--Hb_001269_120 Hb_151094_020 Hb_151094_020 Hb_001862_160--Hb_151094_020 Hb_000438_030 Hb_000438_030 Hb_001862_160--Hb_000438_030 Hb_147060_010 Hb_147060_010 Hb_001862_160--Hb_147060_010 Hb_000483_050 Hb_000483_050 Hb_000656_120--Hb_000483_050 Hb_150745_010 Hb_150745_010 Hb_000656_120--Hb_150745_010 Hb_002045_260 Hb_002045_260 Hb_000656_120--Hb_002045_260 Hb_011849_030 Hb_011849_030 Hb_000656_120--Hb_011849_030 Hb_001159_220 Hb_001159_220 Hb_000656_120--Hb_001159_220 Hb_004096_010--Hb_010598_010 Hb_004096_010--Hb_072997_010 Hb_004096_010--Hb_001269_120 Hb_055440_010 Hb_055440_010 Hb_004096_010--Hb_055440_010 Hb_009767_030 Hb_009767_030 Hb_004096_010--Hb_009767_030 Hb_002157_100 Hb_002157_100 Hb_003413_020--Hb_002157_100 Hb_008080_030 Hb_008080_030 Hb_003413_020--Hb_008080_030 Hb_004703_010 Hb_004703_010 Hb_003413_020--Hb_004703_010 Hb_001922_020 Hb_001922_020 Hb_003413_020--Hb_001922_020 Hb_001754_100 Hb_001754_100 Hb_000563_180--Hb_001754_100 Hb_002874_010 Hb_002874_010 Hb_000563_180--Hb_002874_010 Hb_005306_030 Hb_005306_030 Hb_000563_180--Hb_005306_030 Hb_000563_180--Hb_001862_160 Hb_001366_380 Hb_001366_380 Hb_000563_180--Hb_001366_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0644617 0.284653 0.134748 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.123734 0

CAGE analysis