Hb_004525_110

Information

Type -
Description -
Location Contig4525: 72837-76479
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12850g
description POPTRDRAFT_832384; hypothetical protein
nr
ID XP_002310805.2
description hypothetical protein POPTR_0007s12850g [Populus trichocarpa]
swissprot
ID Q3MHH6
description Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Bos taurus GN=PYROXD2 PE=2 SV=1
trembl
ID B9HEZ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12850g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43236: 72793-73156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004525_110 0.0 - - hypothetical protein POPTR_0007s12850g [Populus trichocarpa]
2 Hb_008554_090 0.1258139744 - - zinc finger protein, putative [Ricinus communis]
3 Hb_022092_050 0.1296391314 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]
4 Hb_000696_030 0.1356097704 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
5 Hb_004551_050 0.1367522431 - - PREDICTED: glucose-6-phosphate/phosphate translocator 2, chloroplastic [Jatropha curcas]
6 Hb_033312_050 0.1373894266 - - PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
7 Hb_001349_020 0.1388338115 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
8 Hb_005679_110 0.1390093897 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
9 Hb_002304_190 0.1409377879 - - PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase [Jatropha curcas]
10 Hb_000696_250 0.1472968764 - - PREDICTED: patellin-6 [Jatropha curcas]
11 Hb_001454_290 0.1483977147 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
12 Hb_005730_070 0.1493247536 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 8 [Jatropha curcas]
13 Hb_009070_030 0.1538836251 - - PREDICTED: mechanosensitive ion channel protein 10 [Jatropha curcas]
14 Hb_009767_030 0.1562057456 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
15 Hb_021888_010 0.1568685372 - - PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Jatropha curcas]
16 Hb_001252_070 0.1574837153 - - hypothetical protein JCGZ_01385 [Jatropha curcas]
17 Hb_001832_140 0.1583225933 - - endomembrane protein 70 family protein [Medicago truncatula]
18 Hb_002685_100 0.1591167632 - - low temperature inducible SLTI66 [Glycine max]
19 Hb_042083_060 0.1602041378 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
20 Hb_000567_060 0.1602186161 - - PREDICTED: U-box domain-containing protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_004525_110 Hb_004525_110 Hb_008554_090 Hb_008554_090 Hb_004525_110--Hb_008554_090 Hb_022092_050 Hb_022092_050 Hb_004525_110--Hb_022092_050 Hb_000696_030 Hb_000696_030 Hb_004525_110--Hb_000696_030 Hb_004551_050 Hb_004551_050 Hb_004525_110--Hb_004551_050 Hb_033312_050 Hb_033312_050 Hb_004525_110--Hb_033312_050 Hb_001349_020 Hb_001349_020 Hb_004525_110--Hb_001349_020 Hb_002110_060 Hb_002110_060 Hb_008554_090--Hb_002110_060 Hb_005730_070 Hb_005730_070 Hb_008554_090--Hb_005730_070 Hb_009070_030 Hb_009070_030 Hb_008554_090--Hb_009070_030 Hb_150730_010 Hb_150730_010 Hb_008554_090--Hb_150730_010 Hb_042083_060 Hb_042083_060 Hb_008554_090--Hb_042083_060 Hb_002304_190 Hb_002304_190 Hb_022092_050--Hb_002304_190 Hb_009486_120 Hb_009486_120 Hb_022092_050--Hb_009486_120 Hb_000696_250 Hb_000696_250 Hb_022092_050--Hb_000696_250 Hb_022092_050--Hb_001349_020 Hb_000018_120 Hb_000018_120 Hb_022092_050--Hb_000018_120 Hb_001832_110 Hb_001832_110 Hb_022092_050--Hb_001832_110 Hb_001157_190 Hb_001157_190 Hb_000696_030--Hb_001157_190 Hb_001776_070 Hb_001776_070 Hb_000696_030--Hb_001776_070 Hb_005679_110 Hb_005679_110 Hb_000696_030--Hb_005679_110 Hb_005839_030 Hb_005839_030 Hb_000696_030--Hb_005839_030 Hb_001195_740 Hb_001195_740 Hb_000696_030--Hb_001195_740 Hb_005144_080 Hb_005144_080 Hb_000696_030--Hb_005144_080 Hb_001634_030 Hb_001634_030 Hb_004551_050--Hb_001634_030 Hb_005332_010 Hb_005332_010 Hb_004551_050--Hb_005332_010 Hb_004551_050--Hb_022092_050 Hb_000567_060 Hb_000567_060 Hb_004551_050--Hb_000567_060 Hb_000723_050 Hb_000723_050 Hb_004551_050--Hb_000723_050 Hb_033312_050--Hb_002304_190 Hb_000760_080 Hb_000760_080 Hb_033312_050--Hb_000760_080 Hb_033312_050--Hb_001349_020 Hb_033312_050--Hb_001832_110 Hb_033312_050--Hb_005730_070 Hb_000017_320 Hb_000017_320 Hb_033312_050--Hb_000017_320 Hb_001349_020--Hb_005679_110 Hb_001345_020 Hb_001345_020 Hb_001349_020--Hb_001345_020 Hb_001349_020--Hb_000017_320 Hb_001349_020--Hb_005730_070 Hb_001349_020--Hb_000696_250 Hb_002003_010 Hb_002003_010 Hb_001349_020--Hb_002003_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0984866 0.714901 2.34036 1.28952 0.0263091 0.0829835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0644913 0 0 2.5833 0.408555

CAGE analysis