Hb_002030_120

Information

Type -
Description -
Location Contig2030: 147325-148979
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002030_120 0.0 - - -
2 Hb_076233_030 0.1813402487 - - PREDICTED: phosphoserine phosphatase, chloroplastic [Jatropha curcas]
3 Hb_014497_030 0.2115913086 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
4 Hb_000189_390 0.2118509537 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
5 Hb_000985_040 0.2143297892 transcription factor TF Family: Orphans B-box type zinc finger protein with CCT domain isoform 1 [Theobroma cacao]
6 Hb_000803_090 0.2274989341 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
7 Hb_002249_040 0.232320589 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1-like [Jatropha curcas]
8 Hb_008725_140 0.2407539948 - - PREDICTED: kynurenine--oxoglutarate transaminase-like isoform X1 [Jatropha curcas]
9 Hb_073973_030 0.2470342573 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
10 Hb_001135_110 0.2485306171 - - -
11 Hb_000538_260 0.252327435 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
12 Hb_075203_010 0.2528283193 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
13 Hb_011344_070 0.2533337457 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
14 Hb_000638_260 0.2543176503 - - hypothetical protein JCGZ_06730 [Jatropha curcas]
15 Hb_003747_050 0.2571759282 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
16 Hb_001102_190 0.2591966344 - - PREDICTED: uncharacterized protein LOC105112724 [Populus euphratica]
17 Hb_000732_030 0.2601416058 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002301_210 0.2601818422 - - PREDICTED: receptor-like protein kinase At5g59670 isoform X2 [Jatropha curcas]
19 Hb_002255_040 0.2613710648 - - PREDICTED: biotin synthase [Jatropha curcas]
20 Hb_011609_010 0.2624882707 - - PREDICTED: zinc transporter 5 [Jatropha curcas]

Gene co-expression network

sample Hb_002030_120 Hb_002030_120 Hb_076233_030 Hb_076233_030 Hb_002030_120--Hb_076233_030 Hb_014497_030 Hb_014497_030 Hb_002030_120--Hb_014497_030 Hb_000189_390 Hb_000189_390 Hb_002030_120--Hb_000189_390 Hb_000985_040 Hb_000985_040 Hb_002030_120--Hb_000985_040 Hb_000803_090 Hb_000803_090 Hb_002030_120--Hb_000803_090 Hb_002249_040 Hb_002249_040 Hb_002030_120--Hb_002249_040 Hb_076233_030--Hb_000189_390 Hb_076233_030--Hb_014497_030 Hb_076233_030--Hb_000803_090 Hb_002960_110 Hb_002960_110 Hb_076233_030--Hb_002960_110 Hb_003529_180 Hb_003529_180 Hb_076233_030--Hb_003529_180 Hb_014497_030--Hb_000189_390 Hb_014497_030--Hb_000803_090 Hb_011609_010 Hb_011609_010 Hb_014497_030--Hb_011609_010 Hb_001776_200 Hb_001776_200 Hb_014497_030--Hb_001776_200 Hb_002301_210 Hb_002301_210 Hb_014497_030--Hb_002301_210 Hb_000189_390--Hb_000803_090 Hb_000189_390--Hb_011609_010 Hb_000189_390--Hb_003529_180 Hb_124951_010 Hb_124951_010 Hb_000189_390--Hb_124951_010 Hb_003849_040 Hb_003849_040 Hb_000985_040--Hb_003849_040 Hb_002890_150 Hb_002890_150 Hb_000985_040--Hb_002890_150 Hb_010287_030 Hb_010287_030 Hb_000985_040--Hb_010287_030 Hb_000077_120 Hb_000077_120 Hb_000985_040--Hb_000077_120 Hb_011344_070 Hb_011344_070 Hb_000985_040--Hb_011344_070 Hb_048476_150 Hb_048476_150 Hb_000985_040--Hb_048476_150 Hb_000803_090--Hb_011609_010 Hb_003747_050 Hb_003747_050 Hb_000803_090--Hb_003747_050 Hb_000008_390 Hb_000008_390 Hb_000803_090--Hb_000008_390 Hb_001624_040 Hb_001624_040 Hb_000803_090--Hb_001624_040 Hb_000803_090--Hb_002301_210 Hb_000631_090 Hb_000631_090 Hb_000803_090--Hb_000631_090 Hb_008725_140 Hb_008725_140 Hb_002249_040--Hb_008725_140 Hb_006618_070 Hb_006618_070 Hb_002249_040--Hb_006618_070 Hb_002249_040--Hb_001624_040 Hb_004116_160 Hb_004116_160 Hb_002249_040--Hb_004116_160 Hb_002249_040--Hb_002301_210 Hb_000749_200 Hb_000749_200 Hb_002249_040--Hb_000749_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.37361 1.78608 9.72497 1.41921 0.925865 3.86265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.510241 0 0 1.50582 1.34529

CAGE analysis