Hb_001100_030

Information

Type -
Description -
Location Contig1100: 29582-30496
Sequence    

Annotation

kegg
ID pop:POPTR_0015s00420g
description POPTRDRAFT_775590; hypothetical protein
nr
ID XP_002321943.1
description hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
swissprot
ID Q9LJF8
description F-box/LRR-repeat protein At3g26922 OS=Arabidopsis thaliana GN=At3g26922 PE=2 SV=2
trembl
ID B9IDE7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s00420g PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box fbd lrr-repeat protein at4g03220 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001100_030 0.0 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
2 Hb_000000_240 0.1643742754 - - PREDICTED: protein LYK5-like [Jatropha curcas]
3 Hb_000051_030 0.1893991854 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
4 Hb_000836_610 0.1993065355 - - stem-specific protein TSJT1-like [Jatropha curcas]
5 Hb_068492_010 0.202761074 - - -
6 Hb_001842_060 0.2163820096 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]
7 Hb_004286_030 0.2183137143 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
8 Hb_003845_020 0.2274594446 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_001486_140 0.2301611962 - - PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera]
10 Hb_002598_010 0.2327488897 - - sugar transporter, putative [Ricinus communis]
11 Hb_001248_030 0.235302963 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_007259_040 0.2362600878 - - hypothetical protein VITISV_005492 [Vitis vinifera]
13 Hb_000625_060 0.2434642643 - - Protein P21, putative [Ricinus communis]
14 Hb_004657_040 0.2438468251 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
15 Hb_002304_140 0.2459611661 - - ring finger protein, putative [Ricinus communis]
16 Hb_000181_160 0.2464818111 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]
17 Hb_004195_110 0.2471582245 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
18 Hb_002662_090 0.2479559225 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
19 Hb_007773_030 0.2493227242 - - -
20 Hb_002030_170 0.2521236124 - - PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001100_030 Hb_001100_030 Hb_000000_240 Hb_000000_240 Hb_001100_030--Hb_000000_240 Hb_000051_030 Hb_000051_030 Hb_001100_030--Hb_000051_030 Hb_000836_610 Hb_000836_610 Hb_001100_030--Hb_000836_610 Hb_068492_010 Hb_068492_010 Hb_001100_030--Hb_068492_010 Hb_001842_060 Hb_001842_060 Hb_001100_030--Hb_001842_060 Hb_004286_030 Hb_004286_030 Hb_001100_030--Hb_004286_030 Hb_001248_030 Hb_001248_030 Hb_000000_240--Hb_001248_030 Hb_002598_010 Hb_002598_010 Hb_000000_240--Hb_002598_010 Hb_002304_140 Hb_002304_140 Hb_000000_240--Hb_002304_140 Hb_000638_090 Hb_000638_090 Hb_000000_240--Hb_000638_090 Hb_002781_010 Hb_002781_010 Hb_000000_240--Hb_002781_010 Hb_000347_020 Hb_000347_020 Hb_000051_030--Hb_000347_020 Hb_000051_030--Hb_004286_030 Hb_029622_020 Hb_029622_020 Hb_000051_030--Hb_029622_020 Hb_000051_030--Hb_068492_010 Hb_002662_090 Hb_002662_090 Hb_000051_030--Hb_002662_090 Hb_001318_110 Hb_001318_110 Hb_000051_030--Hb_001318_110 Hb_002641_050 Hb_002641_050 Hb_000836_610--Hb_002641_050 Hb_000836_610--Hb_068492_010 Hb_000836_610--Hb_001842_060 Hb_042083_060 Hb_042083_060 Hb_000836_610--Hb_042083_060 Hb_000836_610--Hb_000051_030 Hb_001195_220 Hb_001195_220 Hb_000836_610--Hb_001195_220 Hb_068492_010--Hb_029622_020 Hb_068492_010--Hb_002641_050 Hb_008453_080 Hb_008453_080 Hb_068492_010--Hb_008453_080 Hb_019863_030 Hb_019863_030 Hb_068492_010--Hb_019863_030 Hb_002030_170 Hb_002030_170 Hb_001842_060--Hb_002030_170 Hb_002471_140 Hb_002471_140 Hb_001842_060--Hb_002471_140 Hb_001842_060--Hb_002662_090 Hb_000953_040 Hb_000953_040 Hb_001842_060--Hb_000953_040 Hb_004631_080 Hb_004631_080 Hb_001842_060--Hb_004631_080 Hb_000345_340 Hb_000345_340 Hb_001842_060--Hb_000345_340 Hb_004286_030--Hb_002662_090 Hb_010578_050 Hb_010578_050 Hb_004286_030--Hb_010578_050 Hb_004286_030--Hb_001842_060 Hb_005186_090 Hb_005186_090 Hb_004286_030--Hb_005186_090 Hb_000625_060 Hb_000625_060 Hb_004286_030--Hb_000625_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.179176 0.842996 0.537415 0.18907 0.0247936 0.0871679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.113352 0.133715 0 1.09591 0

CAGE analysis