Hb_002598_010

Information

Type -
Description -
Location Contig2598: 1612-5272
Sequence    

Annotation

kegg
ID rcu:RCOM_1430080
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_002512321.1
description sugar transporter, putative [Ricinus communis]
swissprot
ID Q94AF9
description Sugar transporter ERD6-like 11 OS=Arabidopsis thaliana GN=At3g05165 PE=2 SV=2
trembl
ID B9RF02
description Sugar transporter, putative OS=Ricinus communis GN=RCOM_1430080 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002598_010 0.0 - - sugar transporter, putative [Ricinus communis]
2 Hb_007676_020 0.1804358795 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Jatropha curcas]
3 Hb_003607_060 0.1824406189 - - PREDICTED: alcohol dehydrogenase-like [Jatropha curcas]
4 Hb_000084_220 0.1831019396 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
5 Hb_000863_030 0.1871894947 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
6 Hb_000000_240 0.1895350006 - - PREDICTED: protein LYK5-like [Jatropha curcas]
7 Hb_181110_010 0.1991291955 - - auxin:hydrogen symporter, putative [Ricinus communis]
8 Hb_020805_170 0.2017500943 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
9 Hb_002304_140 0.2021335786 - - ring finger protein, putative [Ricinus communis]
10 Hb_001122_010 0.2021619103 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_006573_300 0.2036701297 - - ATP binding protein, putative [Ricinus communis]
12 Hb_001828_020 0.2039283712 - - hypothetical protein CISIN_1g010132mg [Citrus sinensis]
13 Hb_008066_070 0.2053061917 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
14 Hb_003845_020 0.2085131706 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_029584_090 0.2110167591 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
16 Hb_000051_030 0.2111638107 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
17 Hb_000840_070 0.2138981294 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
18 Hb_003894_100 0.2153668882 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
19 Hb_010270_010 0.215494033 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
20 Hb_127886_010 0.2167259432 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]

Gene co-expression network

sample Hb_002598_010 Hb_002598_010 Hb_007676_020 Hb_007676_020 Hb_002598_010--Hb_007676_020 Hb_003607_060 Hb_003607_060 Hb_002598_010--Hb_003607_060 Hb_000084_220 Hb_000084_220 Hb_002598_010--Hb_000084_220 Hb_000863_030 Hb_000863_030 Hb_002598_010--Hb_000863_030 Hb_000000_240 Hb_000000_240 Hb_002598_010--Hb_000000_240 Hb_181110_010 Hb_181110_010 Hb_002598_010--Hb_181110_010 Hb_001114_070 Hb_001114_070 Hb_007676_020--Hb_001114_070 Hb_008066_070 Hb_008066_070 Hb_007676_020--Hb_008066_070 Hb_020805_170 Hb_020805_170 Hb_007676_020--Hb_020805_170 Hb_007676_020--Hb_000084_220 Hb_006573_300 Hb_006573_300 Hb_007676_020--Hb_006573_300 Hb_031862_040 Hb_031862_040 Hb_007676_020--Hb_031862_040 Hb_005181_180 Hb_005181_180 Hb_003607_060--Hb_005181_180 Hb_000702_060 Hb_000702_060 Hb_003607_060--Hb_000702_060 Hb_001341_200 Hb_001341_200 Hb_003607_060--Hb_001341_200 Hb_000139_140 Hb_000139_140 Hb_003607_060--Hb_000139_140 Hb_000009_140 Hb_000009_140 Hb_003607_060--Hb_000009_140 Hb_004586_240 Hb_004586_240 Hb_003607_060--Hb_004586_240 Hb_128589_010 Hb_128589_010 Hb_000084_220--Hb_128589_010 Hb_002471_140 Hb_002471_140 Hb_000084_220--Hb_002471_140 Hb_000205_250 Hb_000205_250 Hb_000084_220--Hb_000205_250 Hb_000805_190 Hb_000805_190 Hb_000084_220--Hb_000805_190 Hb_009646_010 Hb_009646_010 Hb_000084_220--Hb_009646_010 Hb_000084_220--Hb_000009_140 Hb_005779_030 Hb_005779_030 Hb_000863_030--Hb_005779_030 Hb_028001_020 Hb_028001_020 Hb_000863_030--Hb_028001_020 Hb_039342_010 Hb_039342_010 Hb_000863_030--Hb_039342_010 Hb_001675_010 Hb_001675_010 Hb_000863_030--Hb_001675_010 Hb_010270_010 Hb_010270_010 Hb_000863_030--Hb_010270_010 Hb_001248_030 Hb_001248_030 Hb_000000_240--Hb_001248_030 Hb_001100_030 Hb_001100_030 Hb_000000_240--Hb_001100_030 Hb_002304_140 Hb_002304_140 Hb_000000_240--Hb_002304_140 Hb_000638_090 Hb_000638_090 Hb_000000_240--Hb_000638_090 Hb_002781_010 Hb_002781_010 Hb_000000_240--Hb_002781_010 Hb_003845_020 Hb_003845_020 Hb_181110_010--Hb_003845_020 Hb_009732_020 Hb_009732_020 Hb_181110_010--Hb_009732_020 Hb_001946_150 Hb_001946_150 Hb_181110_010--Hb_001946_150 Hb_002631_040 Hb_002631_040 Hb_181110_010--Hb_002631_040 Hb_006717_070 Hb_006717_070 Hb_181110_010--Hb_006717_070 Hb_000120_390 Hb_000120_390 Hb_181110_010--Hb_000120_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.496891 1.49197 0.50977 0.64303 0.0318679 0.118319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.388283 0.122175 0.284621 1.76073 0.0633389

CAGE analysis