Hb_003607_060

Information

Type -
Description -
Location Contig3607: 82754-85916
Sequence    

Annotation

kegg
ID egr:104426870
description alcohol dehydrogenase 3-like
nr
ID XP_012085164.1
description PREDICTED: alcohol dehydrogenase-like [Jatropha curcas]
swissprot
ID P14673
description Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=ADH1 PE=2 SV=1
trembl
ID A0A067JR37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17579 PE=3 SV=1
Gene Ontology
ID GO:0003979
description alcohol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37160: 82852-85825
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003607_060 0.0 - - PREDICTED: alcohol dehydrogenase-like [Jatropha curcas]
2 Hb_005181_180 0.1323161807 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000702_060 0.1382282513 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001341_200 0.1386680719 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
5 Hb_000139_140 0.1427894274 - - Acyl-CoA synthetase [Ricinus communis]
6 Hb_000009_140 0.1514327485 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
7 Hb_004586_240 0.1531998247 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
8 Hb_001900_060 0.1569963273 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
9 Hb_000244_280 0.1573362767 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X1 [Jatropha curcas]
10 Hb_000649_120 0.158893012 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_004495_020 0.1618404204 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_000084_220 0.1650666095 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
13 Hb_009646_010 0.1664679088 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
14 Hb_027136_040 0.1669732137 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
15 Hb_005504_030 0.1674885911 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
16 Hb_003894_100 0.168271581 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
17 Hb_000684_360 0.1714544626 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
18 Hb_000465_260 0.1723504576 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
19 Hb_012545_090 0.1736177839 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
20 Hb_000220_080 0.1740335985 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003607_060 Hb_003607_060 Hb_005181_180 Hb_005181_180 Hb_003607_060--Hb_005181_180 Hb_000702_060 Hb_000702_060 Hb_003607_060--Hb_000702_060 Hb_001341_200 Hb_001341_200 Hb_003607_060--Hb_001341_200 Hb_000139_140 Hb_000139_140 Hb_003607_060--Hb_000139_140 Hb_000009_140 Hb_000009_140 Hb_003607_060--Hb_000009_140 Hb_004586_240 Hb_004586_240 Hb_003607_060--Hb_004586_240 Hb_005181_180--Hb_001341_200 Hb_005181_180--Hb_000702_060 Hb_000684_360 Hb_000684_360 Hb_005181_180--Hb_000684_360 Hb_000793_040 Hb_000793_040 Hb_005181_180--Hb_000793_040 Hb_001900_060 Hb_001900_060 Hb_005181_180--Hb_001900_060 Hb_000702_060--Hb_000684_360 Hb_053575_020 Hb_053575_020 Hb_000702_060--Hb_053575_020 Hb_000337_010 Hb_000337_010 Hb_000702_060--Hb_000337_010 Hb_000347_110 Hb_000347_110 Hb_000702_060--Hb_000347_110 Hb_001780_150 Hb_001780_150 Hb_000702_060--Hb_001780_150 Hb_009646_010 Hb_009646_010 Hb_001341_200--Hb_009646_010 Hb_004495_020 Hb_004495_020 Hb_001341_200--Hb_004495_020 Hb_029584_090 Hb_029584_090 Hb_001341_200--Hb_029584_090 Hb_004195_090 Hb_004195_090 Hb_001341_200--Hb_004195_090 Hb_001341_200--Hb_000139_140 Hb_000220_110 Hb_000220_110 Hb_000139_140--Hb_000220_110 Hb_003227_010 Hb_003227_010 Hb_000139_140--Hb_003227_010 Hb_001014_190 Hb_001014_190 Hb_000139_140--Hb_001014_190 Hb_000139_140--Hb_004495_020 Hb_000139_140--Hb_000009_140 Hb_000139_140--Hb_009646_010 Hb_005504_030 Hb_005504_030 Hb_000009_140--Hb_005504_030 Hb_000009_140--Hb_004586_240 Hb_033363_010 Hb_033363_010 Hb_000009_140--Hb_033363_010 Hb_000072_020 Hb_000072_020 Hb_000009_140--Hb_000072_020 Hb_000009_140--Hb_009646_010 Hb_010068_070 Hb_010068_070 Hb_000009_140--Hb_010068_070 Hb_004586_240--Hb_005504_030 Hb_001856_170 Hb_001856_170 Hb_004586_240--Hb_001856_170 Hb_000120_310 Hb_000120_310 Hb_004586_240--Hb_000120_310 Hb_001369_160 Hb_001369_160 Hb_004586_240--Hb_001369_160 Hb_001596_020 Hb_001596_020 Hb_004586_240--Hb_001596_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8236 34.1425 16.2363 36.8112 2.07905 5.56706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.91707 2.90837 7.57415 61.1564 12.9575

CAGE analysis