Hb_003227_010

Information

Type -
Description -
Location Contig3227: 2410-10504
Sequence    

Annotation

kegg
ID tcc:TCM_015794
description DYNAMIN-like 1E isoform 1
nr
ID XP_012075060.1
description PREDICTED: dynamin-related protein 1E-like [Jatropha curcas]
swissprot
ID Q9FNX5
description Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1
trembl
ID A0A067LNA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11857 PE=3 SV=1
Gene Ontology
ID GO:0003924
description dynamin-related protein 1e-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34220: 2431-7650 , PASA_asmbl_34221: 7827-10181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003227_010 0.0 - - PREDICTED: dynamin-related protein 1E-like [Jatropha curcas]
2 Hb_000220_110 0.0859239673 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
3 Hb_010872_040 0.0968246519 - - hypothetical protein F775_31993 [Aegilops tauschii]
4 Hb_000139_140 0.1136057889 - - Acyl-CoA synthetase [Ricinus communis]
5 Hb_000235_050 0.1136536458 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005970_010 0.1149747882 - - PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X2 [Jatropha curcas]
7 Hb_002808_020 0.1150758291 - - PREDICTED: uncharacterized protein LOC105630318 isoform X1 [Jatropha curcas]
8 Hb_001616_070 0.117097368 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
9 Hb_001004_140 0.1241904554 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
10 Hb_000309_030 0.1260817251 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
11 Hb_000157_070 0.1273229368 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
12 Hb_001900_100 0.1284578613 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
13 Hb_002317_010 0.1294797872 - - PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Jatropha curcas]
14 Hb_003683_130 0.1307754459 - - PREDICTED: enolase 1, chloroplastic [Jatropha curcas]
15 Hb_008053_060 0.1316396214 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
16 Hb_158845_060 0.1329140338 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
17 Hb_001018_060 0.1335167167 - - hypothetical protein B456_001G028000 [Gossypium raimondii]
18 Hb_002301_250 0.1340394784 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Jatropha curcas]
19 Hb_132101_010 0.1342756427 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
20 Hb_000258_090 0.1343776157 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003227_010 Hb_003227_010 Hb_000220_110 Hb_000220_110 Hb_003227_010--Hb_000220_110 Hb_010872_040 Hb_010872_040 Hb_003227_010--Hb_010872_040 Hb_000139_140 Hb_000139_140 Hb_003227_010--Hb_000139_140 Hb_000235_050 Hb_000235_050 Hb_003227_010--Hb_000235_050 Hb_005970_010 Hb_005970_010 Hb_003227_010--Hb_005970_010 Hb_002808_020 Hb_002808_020 Hb_003227_010--Hb_002808_020 Hb_001616_070 Hb_001616_070 Hb_000220_110--Hb_001616_070 Hb_000220_110--Hb_000139_140 Hb_000172_280 Hb_000172_280 Hb_000220_110--Hb_000172_280 Hb_000683_050 Hb_000683_050 Hb_000220_110--Hb_000683_050 Hb_003683_130 Hb_003683_130 Hb_000220_110--Hb_003683_130 Hb_010872_040--Hb_000235_050 Hb_010872_040--Hb_005970_010 Hb_028115_010 Hb_028115_010 Hb_010872_040--Hb_028115_010 Hb_001014_190 Hb_001014_190 Hb_010872_040--Hb_001014_190 Hb_010872_040--Hb_000139_140 Hb_000139_140--Hb_001014_190 Hb_004495_020 Hb_004495_020 Hb_000139_140--Hb_004495_020 Hb_000009_140 Hb_000009_140 Hb_000139_140--Hb_000009_140 Hb_009646_010 Hb_009646_010 Hb_000139_140--Hb_009646_010 Hb_000401_010 Hb_000401_010 Hb_000235_050--Hb_000401_010 Hb_000248_100 Hb_000248_100 Hb_000235_050--Hb_000248_100 Hb_000235_050--Hb_005970_010 Hb_008053_060 Hb_008053_060 Hb_000235_050--Hb_008053_060 Hb_001085_080 Hb_001085_080 Hb_005970_010--Hb_001085_080 Hb_000000_120 Hb_000000_120 Hb_005970_010--Hb_000000_120 Hb_012180_010 Hb_012180_010 Hb_005970_010--Hb_012180_010 Hb_001097_040 Hb_001097_040 Hb_005970_010--Hb_001097_040 Hb_003506_020 Hb_003506_020 Hb_005970_010--Hb_003506_020 Hb_028077_020 Hb_028077_020 Hb_005970_010--Hb_028077_020 Hb_002639_030 Hb_002639_030 Hb_002808_020--Hb_002639_030 Hb_103688_010 Hb_103688_010 Hb_002808_020--Hb_103688_010 Hb_004837_280 Hb_004837_280 Hb_002808_020--Hb_004837_280 Hb_000849_080 Hb_000849_080 Hb_002808_020--Hb_000849_080 Hb_002301_030 Hb_002301_030 Hb_002808_020--Hb_002301_030 Hb_002687_200 Hb_002687_200 Hb_002808_020--Hb_002687_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28038 5.06126 7.18809 10.1348 1.86368 2.37091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.58999 1.43159 1.31111 11.5199 3.38605

CAGE analysis