Hb_008053_060

Information

Type -
Description -
Location Contig8053: 89240-94082
Sequence    

Annotation

kegg
ID pop:POPTR_0002s16140g
description POPTRDRAFT_552174; hypothetical protein
nr
ID XP_012083385.1
description PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
swissprot
ID Q75RY2
description Protein PAIR1 OS=Oryza sativa subsp. japonica GN=PAIR1 PE=1 SV=1
trembl
ID A0A067JXJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14393 PE=4 SV=1
Gene Ontology
ID GO:0007127
description recombination initiation defects isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59026: 90204-91518 , PASA_asmbl_59027: 90204-91531 , PASA_asmbl_59028: 92065-93128
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008053_060 0.0 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
2 Hb_001004_140 0.0991813055 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
3 Hb_089140_040 0.1023243355 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]
4 Hb_007185_040 0.1079430203 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
5 Hb_006468_010 0.1099189375 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
6 Hb_003636_080 0.1121052063 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
7 Hb_005489_140 0.1165211267 - - PREDICTED: maspardin [Jatropha curcas]
8 Hb_107298_010 0.1178576691 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
9 Hb_005180_010 0.1199919265 - - cyclophilin [Hevea brasiliensis]
10 Hb_000926_260 0.1204129885 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000088_270 0.1268498948 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
12 Hb_001008_100 0.1276860291 - - JHL25H03.10 [Jatropha curcas]
13 Hb_000890_160 0.1305559165 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
14 Hb_003227_010 0.1316396214 - - PREDICTED: dynamin-related protein 1E-like [Jatropha curcas]
15 Hb_000297_030 0.132431999 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
16 Hb_000787_200 0.133827649 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000008_090 0.1339343469 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
18 Hb_005504_030 0.1341777177 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
19 Hb_001300_280 0.1342307705 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
20 Hb_000342_050 0.1342358942 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]

Gene co-expression network

sample Hb_008053_060 Hb_008053_060 Hb_001004_140 Hb_001004_140 Hb_008053_060--Hb_001004_140 Hb_089140_040 Hb_089140_040 Hb_008053_060--Hb_089140_040 Hb_007185_040 Hb_007185_040 Hb_008053_060--Hb_007185_040 Hb_006468_010 Hb_006468_010 Hb_008053_060--Hb_006468_010 Hb_003636_080 Hb_003636_080 Hb_008053_060--Hb_003636_080 Hb_005489_140 Hb_005489_140 Hb_008053_060--Hb_005489_140 Hb_000008_090 Hb_000008_090 Hb_001004_140--Hb_000008_090 Hb_000144_120 Hb_000144_120 Hb_001004_140--Hb_000144_120 Hb_001004_140--Hb_007185_040 Hb_001004_140--Hb_089140_040 Hb_001004_140--Hb_006468_010 Hb_000174_140 Hb_000174_140 Hb_001004_140--Hb_000174_140 Hb_089140_040--Hb_006468_010 Hb_012092_050 Hb_012092_050 Hb_089140_040--Hb_012092_050 Hb_089140_040--Hb_005489_140 Hb_005215_020 Hb_005215_020 Hb_089140_040--Hb_005215_020 Hb_000008_420 Hb_000008_420 Hb_089140_040--Hb_000008_420 Hb_015026_130 Hb_015026_130 Hb_089140_040--Hb_015026_130 Hb_172112_020 Hb_172112_020 Hb_007185_040--Hb_172112_020 Hb_002596_060 Hb_002596_060 Hb_007185_040--Hb_002596_060 Hb_010872_050 Hb_010872_050 Hb_007185_040--Hb_010872_050 Hb_016734_020 Hb_016734_020 Hb_007185_040--Hb_016734_020 Hb_107298_010 Hb_107298_010 Hb_007185_040--Hb_107298_010 Hb_000890_160 Hb_000890_160 Hb_006468_010--Hb_000890_160 Hb_006468_010--Hb_003636_080 Hb_000297_030 Hb_000297_030 Hb_006468_010--Hb_000297_030 Hb_016461_020 Hb_016461_020 Hb_006468_010--Hb_016461_020 Hb_115137_010 Hb_115137_010 Hb_006468_010--Hb_115137_010 Hb_001300_280 Hb_001300_280 Hb_003636_080--Hb_001300_280 Hb_011674_040 Hb_011674_040 Hb_003636_080--Hb_011674_040 Hb_000173_190 Hb_000173_190 Hb_003636_080--Hb_000173_190 Hb_000318_150 Hb_000318_150 Hb_003636_080--Hb_000318_150 Hb_000787_200 Hb_000787_200 Hb_003636_080--Hb_000787_200 Hb_005489_140--Hb_107298_010 Hb_025336_020 Hb_025336_020 Hb_005489_140--Hb_025336_020 Hb_001019_050 Hb_001019_050 Hb_005489_140--Hb_001019_050 Hb_083799_010 Hb_083799_010 Hb_005489_140--Hb_083799_010 Hb_008790_020 Hb_008790_020 Hb_005489_140--Hb_008790_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.632908 1.76536 2.24207 1.96315 0.644639 0.682462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.761309 1.07798 0.223407 3.0199 0.932249

CAGE analysis