Hb_000000_240

Information

Type -
Description -
Location Contig0: 451287-453383
Sequence    

Annotation

kegg
ID rcu:RCOM_1593420
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_012071767.1
description PREDICTED: protein LYK5-like [Jatropha curcas]
swissprot
ID O64825
description LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana GN=LYK4 PE=1 SV=1
trembl
ID A0A067KQG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04381 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_240 0.0 - - PREDICTED: protein LYK5-like [Jatropha curcas]
2 Hb_001248_030 0.1632824458 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_001100_030 0.1643742754 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
4 Hb_002598_010 0.1895350006 - - sugar transporter, putative [Ricinus communis]
5 Hb_002304_140 0.1919806101 - - ring finger protein, putative [Ricinus communis]
6 Hb_000638_090 0.2073887696 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_002781_010 0.2087124574 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
8 Hb_004410_150 0.2108624318 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
9 Hb_001122_010 0.2147917543 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_007259_040 0.2148937141 - - hypothetical protein VITISV_005492 [Vitis vinifera]
11 Hb_003894_100 0.2164017038 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
12 Hb_007416_150 0.2179751483 - - sarcosine oxidase, putative [Ricinus communis]
13 Hb_001842_060 0.2190486621 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]
14 Hb_000051_030 0.2190702329 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
15 Hb_068492_010 0.2216565454 - - -
16 Hb_001584_010 0.2217948602 - - kelch repeat protein, putative [Ricinus communis]
17 Hb_004657_040 0.2232805672 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
18 Hb_002662_090 0.2243337936 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
19 Hb_009823_010 0.2263163756 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
20 Hb_000181_160 0.2284311725 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000000_240 Hb_000000_240 Hb_001248_030 Hb_001248_030 Hb_000000_240--Hb_001248_030 Hb_001100_030 Hb_001100_030 Hb_000000_240--Hb_001100_030 Hb_002598_010 Hb_002598_010 Hb_000000_240--Hb_002598_010 Hb_002304_140 Hb_002304_140 Hb_000000_240--Hb_002304_140 Hb_000638_090 Hb_000638_090 Hb_000000_240--Hb_000638_090 Hb_002781_010 Hb_002781_010 Hb_000000_240--Hb_002781_010 Hb_007416_150 Hb_007416_150 Hb_001248_030--Hb_007416_150 Hb_009823_010 Hb_009823_010 Hb_001248_030--Hb_009823_010 Hb_003576_050 Hb_003576_050 Hb_001248_030--Hb_003576_050 Hb_001408_050 Hb_001408_050 Hb_001248_030--Hb_001408_050 Hb_001248_030--Hb_000638_090 Hb_001248_030--Hb_002304_140 Hb_000051_030 Hb_000051_030 Hb_001100_030--Hb_000051_030 Hb_000836_610 Hb_000836_610 Hb_001100_030--Hb_000836_610 Hb_068492_010 Hb_068492_010 Hb_001100_030--Hb_068492_010 Hb_001842_060 Hb_001842_060 Hb_001100_030--Hb_001842_060 Hb_004286_030 Hb_004286_030 Hb_001100_030--Hb_004286_030 Hb_007676_020 Hb_007676_020 Hb_002598_010--Hb_007676_020 Hb_003607_060 Hb_003607_060 Hb_002598_010--Hb_003607_060 Hb_000084_220 Hb_000084_220 Hb_002598_010--Hb_000084_220 Hb_000863_030 Hb_000863_030 Hb_002598_010--Hb_000863_030 Hb_181110_010 Hb_181110_010 Hb_002598_010--Hb_181110_010 Hb_002304_140--Hb_007416_150 Hb_004195_110 Hb_004195_110 Hb_002304_140--Hb_004195_110 Hb_002304_140--Hb_009823_010 Hb_000165_210 Hb_000165_210 Hb_002304_140--Hb_000165_210 Hb_000098_310 Hb_000098_310 Hb_002304_140--Hb_000098_310 Hb_000638_090--Hb_009823_010 Hb_000638_090--Hb_001408_050 Hb_000638_090--Hb_003576_050 Hb_004218_160 Hb_004218_160 Hb_000638_090--Hb_004218_160 Hb_117168_010 Hb_117168_010 Hb_000638_090--Hb_117168_010 Hb_001675_010 Hb_001675_010 Hb_002781_010--Hb_001675_010 Hb_001122_010 Hb_001122_010 Hb_002781_010--Hb_001122_010 Hb_004586_240 Hb_004586_240 Hb_002781_010--Hb_004586_240 Hb_001625_010 Hb_001625_010 Hb_002781_010--Hb_001625_010 Hb_010270_010 Hb_010270_010 Hb_002781_010--Hb_010270_010 Hb_000840_070 Hb_000840_070 Hb_002781_010--Hb_000840_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.180197 0.601464 0.195093 0.178194 0 0.0745803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0747537 0.0588163 0 0.733848 0.0413192

CAGE analysis