Hb_000863_030

Information

Type transcription factor
Description TF Family: Orphans
Location Contig863: 42553-44110
Sequence    

Annotation

kegg
ID rcu:RCOM_0158410
description two-component system sensor histidine kinase/response regulator, putative
nr
ID XP_002532588.1
description two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
swissprot
ID O80366
description Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1
trembl
ID B9T2W9
description Two-component system sensor histidine kinase/response regulator, putative OS=Ricinus communis GN=RCOM_0158410 PE=4 SV=1
Gene Ontology
ID GO:0000160
description two-component response regulator arr9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000863_030 0.0 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
2 Hb_005779_030 0.1680616506 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
3 Hb_028001_020 0.172197256 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
4 Hb_039342_010 0.1763345408 - - pyruvate decarboxylase [Hevea brasiliensis]
5 Hb_001675_010 0.1792016428 - - hypothetical protein TRIUR3_09961 [Triticum urartu]
6 Hb_010270_010 0.1856408353 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
7 Hb_002598_010 0.1871894947 - - sugar transporter, putative [Ricinus communis]
8 Hb_002259_060 0.1923713354 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X4 [Jatropha curcas]
9 Hb_004586_240 0.1957802889 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
10 Hb_002781_010 0.1981433147 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
11 Hb_003607_060 0.2033855916 - - PREDICTED: alcohol dehydrogenase-like [Jatropha curcas]
12 Hb_003894_100 0.2048275329 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
13 Hb_000009_140 0.2087188 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
14 Hb_001828_020 0.2094018236 - - hypothetical protein CISIN_1g010132mg [Citrus sinensis]
15 Hb_022250_150 0.2094499087 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
16 Hb_001818_060 0.2103821149 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
17 Hb_002122_080 0.2105504529 - - -
18 Hb_001122_010 0.2123768239 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
19 Hb_009646_010 0.2127502444 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
20 Hb_001341_200 0.2131494018 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000863_030 Hb_000863_030 Hb_005779_030 Hb_005779_030 Hb_000863_030--Hb_005779_030 Hb_028001_020 Hb_028001_020 Hb_000863_030--Hb_028001_020 Hb_039342_010 Hb_039342_010 Hb_000863_030--Hb_039342_010 Hb_001675_010 Hb_001675_010 Hb_000863_030--Hb_001675_010 Hb_010270_010 Hb_010270_010 Hb_000863_030--Hb_010270_010 Hb_002598_010 Hb_002598_010 Hb_000863_030--Hb_002598_010 Hb_009646_010 Hb_009646_010 Hb_005779_030--Hb_009646_010 Hb_000059_300 Hb_000059_300 Hb_005779_030--Hb_000059_300 Hb_000110_300 Hb_000110_300 Hb_005779_030--Hb_000110_300 Hb_000465_260 Hb_000465_260 Hb_005779_030--Hb_000465_260 Hb_001818_060 Hb_001818_060 Hb_005779_030--Hb_001818_060 Hb_128589_010 Hb_128589_010 Hb_005779_030--Hb_128589_010 Hb_028001_020--Hb_005779_030 Hb_028001_020--Hb_000465_260 Hb_000000_110 Hb_000000_110 Hb_028001_020--Hb_000000_110 Hb_000025_400 Hb_000025_400 Hb_028001_020--Hb_000025_400 Hb_000110_380 Hb_000110_380 Hb_028001_020--Hb_000110_380 Hb_039342_010--Hb_010270_010 Hb_144096_010 Hb_144096_010 Hb_039342_010--Hb_144096_010 Hb_008221_170 Hb_008221_170 Hb_039342_010--Hb_008221_170 Hb_000371_060 Hb_000371_060 Hb_039342_010--Hb_000371_060 Hb_007426_140 Hb_007426_140 Hb_039342_010--Hb_007426_140 Hb_000215_100 Hb_000215_100 Hb_039342_010--Hb_000215_100 Hb_001699_150 Hb_001699_150 Hb_001675_010--Hb_001699_150 Hb_002524_020 Hb_002524_020 Hb_001675_010--Hb_002524_020 Hb_001799_190 Hb_001799_190 Hb_001675_010--Hb_001799_190 Hb_001675_010--Hb_000371_060 Hb_003544_070 Hb_003544_070 Hb_001675_010--Hb_003544_070 Hb_002781_010 Hb_002781_010 Hb_001675_010--Hb_002781_010 Hb_001122_010 Hb_001122_010 Hb_010270_010--Hb_001122_010 Hb_010270_010--Hb_002781_010 Hb_010270_010--Hb_001675_010 Hb_010270_010--Hb_001799_190 Hb_011716_110 Hb_011716_110 Hb_010270_010--Hb_011716_110 Hb_007676_020 Hb_007676_020 Hb_002598_010--Hb_007676_020 Hb_003607_060 Hb_003607_060 Hb_002598_010--Hb_003607_060 Hb_000084_220 Hb_000084_220 Hb_002598_010--Hb_000084_220 Hb_000000_240 Hb_000000_240 Hb_002598_010--Hb_000000_240 Hb_181110_010 Hb_181110_010 Hb_002598_010--Hb_181110_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.19317 14.5657 4.53976 14.8183 1.17004 1.38971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.86252 3.85051 1.37132 14.8476 0.978162

CAGE analysis