Hb_000215_100

Information

Type -
Description -
Location Contig215: 75108-77032
Sequence    

Annotation

kegg
ID rcu:RCOM_1049360
description hypothetical protein
nr
ID XP_002514213.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RKG9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1049360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22176: 75318-77107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000640_130 0.0848822906 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
3 Hb_001055_030 0.1169435192 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
4 Hb_000976_040 0.1177156448 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
5 Hb_000009_330 0.1226281809 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
6 Hb_001318_020 0.1232029512 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
7 Hb_008160_030 0.1246187553 - - DNA binding protein, putative [Ricinus communis]
8 Hb_008143_070 0.1253426375 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
9 Hb_002890_100 0.131619796 - - PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]
10 Hb_000627_180 0.1321166055 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002005_090 0.132916597 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000237_190 0.1369646039 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X1 [Jatropha curcas]
13 Hb_029695_020 0.1370156708 - - PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]
14 Hb_000823_030 0.1376159257 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
15 Hb_012114_080 0.1377709768 - - gamma-glutamylcysteine synthetase [Hevea brasiliensis]
16 Hb_012799_140 0.1403848705 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
17 Hb_001301_170 0.1406647255 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
18 Hb_000069_410 0.1419452679 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
19 Hb_005143_030 0.1419792882 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
20 Hb_178051_070 0.1436947485 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000215_100 Hb_000215_100 Hb_000640_130 Hb_000640_130 Hb_000215_100--Hb_000640_130 Hb_001055_030 Hb_001055_030 Hb_000215_100--Hb_001055_030 Hb_000976_040 Hb_000976_040 Hb_000215_100--Hb_000976_040 Hb_000009_330 Hb_000009_330 Hb_000215_100--Hb_000009_330 Hb_001318_020 Hb_001318_020 Hb_000215_100--Hb_001318_020 Hb_008160_030 Hb_008160_030 Hb_000215_100--Hb_008160_030 Hb_001416_020 Hb_001416_020 Hb_000640_130--Hb_001416_020 Hb_000640_130--Hb_000976_040 Hb_002005_090 Hb_002005_090 Hb_000640_130--Hb_002005_090 Hb_011716_090 Hb_011716_090 Hb_000640_130--Hb_011716_090 Hb_000521_170 Hb_000521_170 Hb_000640_130--Hb_000521_170 Hb_007894_130 Hb_007894_130 Hb_001055_030--Hb_007894_130 Hb_000236_410 Hb_000236_410 Hb_001055_030--Hb_000236_410 Hb_093084_070 Hb_093084_070 Hb_001055_030--Hb_093084_070 Hb_008143_070 Hb_008143_070 Hb_001055_030--Hb_008143_070 Hb_001055_030--Hb_000009_330 Hb_000622_250 Hb_000622_250 Hb_001055_030--Hb_000622_250 Hb_000853_120 Hb_000853_120 Hb_000976_040--Hb_000853_120 Hb_000200_280 Hb_000200_280 Hb_000976_040--Hb_000200_280 Hb_011512_090 Hb_011512_090 Hb_000976_040--Hb_011512_090 Hb_156850_070 Hb_156850_070 Hb_000976_040--Hb_156850_070 Hb_005143_030 Hb_005143_030 Hb_000976_040--Hb_005143_030 Hb_000059_020 Hb_000059_020 Hb_000009_330--Hb_000059_020 Hb_004994_090 Hb_004994_090 Hb_000009_330--Hb_004994_090 Hb_000169_170 Hb_000169_170 Hb_000009_330--Hb_000169_170 Hb_000862_040 Hb_000862_040 Hb_000009_330--Hb_000862_040 Hb_000009_330--Hb_000236_410 Hb_007054_040 Hb_007054_040 Hb_000009_330--Hb_007054_040 Hb_009615_170 Hb_009615_170 Hb_001318_020--Hb_009615_170 Hb_006355_090 Hb_006355_090 Hb_001318_020--Hb_006355_090 Hb_140049_080 Hb_140049_080 Hb_001318_020--Hb_140049_080 Hb_001377_160 Hb_001377_160 Hb_001318_020--Hb_001377_160 Hb_000130_020 Hb_000130_020 Hb_001318_020--Hb_000130_020 Hb_061878_010 Hb_061878_010 Hb_001318_020--Hb_061878_010 Hb_000352_260 Hb_000352_260 Hb_008160_030--Hb_000352_260 Hb_000940_200 Hb_000940_200 Hb_008160_030--Hb_000940_200 Hb_009083_070 Hb_009083_070 Hb_008160_030--Hb_009083_070 Hb_000363_400 Hb_000363_400 Hb_008160_030--Hb_000363_400 Hb_145880_010 Hb_145880_010 Hb_008160_030--Hb_145880_010 Hb_184798_080 Hb_184798_080 Hb_008160_030--Hb_184798_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.6827 56.5284 16.5759 31.5098 36.6069 20.1149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0635 8.82277 13.3777 56.4853 13.0881

CAGE analysis