Hb_003845_020

Information

Type -
Description -
Location Contig3845: 27873-33852
Sequence    

Annotation

kegg
ID rcu:RCOM_1494390
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.25)
nr
ID XP_002516045.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID B9RQM6
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494390 PE=3 SV=1
Gene Ontology
ID GO:0004672
description proline-rich receptor-like protein kinase perk8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38707: 27891-28298 , PASA_asmbl_38709: 29636-30836 , PASA_asmbl_38710: 32273-33962
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003845_020 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_181110_010 0.1755440314 - - auxin:hydrogen symporter, putative [Ricinus communis]
3 Hb_000853_060 0.182269607 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
4 Hb_000327_070 0.1830629943 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
5 Hb_002304_140 0.1868421389 - - ring finger protein, putative [Ricinus communis]
6 Hb_000165_210 0.1943256384 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
7 Hb_003120_040 0.1960822285 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
8 Hb_006717_070 0.2030761672 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
9 Hb_082741_010 0.2068810012 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
10 Hb_068492_010 0.2075251957 - - -
11 Hb_002598_010 0.2085131706 - - sugar transporter, putative [Ricinus communis]
12 Hb_000421_270 0.2085307548 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
13 Hb_029584_090 0.2106910805 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
14 Hb_007259_040 0.2122746765 - - hypothetical protein VITISV_005492 [Vitis vinifera]
15 Hb_019863_030 0.2124547221 - - hypothetical protein JCGZ_00393 [Jatropha curcas]
16 Hb_002631_040 0.2141585878 - - hypothetical protein EUGRSUZ_J03178 [Eucalyptus grandis]
17 Hb_002236_050 0.2143170689 - - -
18 Hb_007125_040 0.2181742331 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
19 Hb_000084_220 0.2228969072 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
20 Hb_001390_030 0.2255827178 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]

Gene co-expression network

sample Hb_003845_020 Hb_003845_020 Hb_181110_010 Hb_181110_010 Hb_003845_020--Hb_181110_010 Hb_000853_060 Hb_000853_060 Hb_003845_020--Hb_000853_060 Hb_000327_070 Hb_000327_070 Hb_003845_020--Hb_000327_070 Hb_002304_140 Hb_002304_140 Hb_003845_020--Hb_002304_140 Hb_000165_210 Hb_000165_210 Hb_003845_020--Hb_000165_210 Hb_003120_040 Hb_003120_040 Hb_003845_020--Hb_003120_040 Hb_009732_020 Hb_009732_020 Hb_181110_010--Hb_009732_020 Hb_001946_150 Hb_001946_150 Hb_181110_010--Hb_001946_150 Hb_002631_040 Hb_002631_040 Hb_181110_010--Hb_002631_040 Hb_006717_070 Hb_006717_070 Hb_181110_010--Hb_006717_070 Hb_000120_390 Hb_000120_390 Hb_181110_010--Hb_000120_390 Hb_000853_060--Hb_000165_210 Hb_007919_040 Hb_007919_040 Hb_000853_060--Hb_007919_040 Hb_000853_060--Hb_003120_040 Hb_006573_300 Hb_006573_300 Hb_000853_060--Hb_006573_300 Hb_001114_070 Hb_001114_070 Hb_000853_060--Hb_001114_070 Hb_029584_090 Hb_029584_090 Hb_000853_060--Hb_029584_090 Hb_004041_100 Hb_004041_100 Hb_000327_070--Hb_004041_100 Hb_053929_010 Hb_053929_010 Hb_000327_070--Hb_053929_010 Hb_126398_020 Hb_126398_020 Hb_000327_070--Hb_126398_020 Hb_001776_010 Hb_001776_010 Hb_000327_070--Hb_001776_010 Hb_000327_070--Hb_000853_060 Hb_001248_030 Hb_001248_030 Hb_002304_140--Hb_001248_030 Hb_007416_150 Hb_007416_150 Hb_002304_140--Hb_007416_150 Hb_004195_110 Hb_004195_110 Hb_002304_140--Hb_004195_110 Hb_009823_010 Hb_009823_010 Hb_002304_140--Hb_009823_010 Hb_002304_140--Hb_000165_210 Hb_000098_310 Hb_000098_310 Hb_002304_140--Hb_000098_310 Hb_000165_210--Hb_000120_390 Hb_000414_110 Hb_000414_110 Hb_000165_210--Hb_000414_110 Hb_001206_090 Hb_001206_090 Hb_000165_210--Hb_001206_090 Hb_000879_190 Hb_000879_190 Hb_000165_210--Hb_000879_190 Hb_124315_030 Hb_124315_030 Hb_003120_040--Hb_124315_030 Hb_009545_020 Hb_009545_020 Hb_003120_040--Hb_009545_020 Hb_000963_200 Hb_000963_200 Hb_003120_040--Hb_000963_200 Hb_007849_010 Hb_007849_010 Hb_003120_040--Hb_007849_010 Hb_003120_040--Hb_006573_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.12475 13.2373 9.27154 4.56529 0.623482 0.488815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.73715 6.63516 1.67255 27.8812 2.29544

CAGE analysis