Hb_000327_070

Information

Type transcription factor
Description TF Family: ERF
Location Contig327: 74226-77178
Sequence    

Annotation

kegg
ID rcu:RCOM_1070220
description DNA binding protein, putative (EC:1.3.1.74)
nr
ID XP_012073677.1
description PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
swissprot
ID Q9SK03
description Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2
trembl
ID A0A067LNU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06660 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34362: 75558-75680 , PASA_asmbl_34363: 75756-75943
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_070 0.0 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
2 Hb_004041_100 0.1707605228 - - -
3 Hb_053929_010 0.1711949545 - - hypothetical protein POPTR_0010s22320g [Populus trichocarpa]
4 Hb_126398_020 0.179501825 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003845_020 0.1830629943 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_001776_010 0.1859877296 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
7 Hb_000853_060 0.1929938868 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
8 Hb_101449_010 0.1932293417 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
9 Hb_004631_080 0.1946042022 - - P3B-ATPase PH1 [Petunia x hybrida]
10 Hb_000173_260 0.195232636 - - hypothetical protein L484_010046 [Morus notabilis]
11 Hb_011200_020 0.1993459895 - - aldo-keto reductase, putative [Ricinus communis]
12 Hb_000656_200 0.2015326176 - - PREDICTED: uncharacterized protein LOC105631373 [Jatropha curcas]
13 Hb_032225_040 0.2021223635 - - -
14 Hb_000005_340 0.2029607853 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
15 Hb_001405_150 0.2031309922 - - PREDICTED: protein At-4/1 [Jatropha curcas]
16 Hb_000009_440 0.2039082966 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
17 Hb_001006_280 0.2047373102 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
18 Hb_068492_010 0.2048876882 - - -
19 Hb_000347_110 0.2054254935 - - BnaA05g25330D [Brassica napus]
20 Hb_008749_020 0.2076594678 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000327_070 Hb_000327_070 Hb_004041_100 Hb_004041_100 Hb_000327_070--Hb_004041_100 Hb_053929_010 Hb_053929_010 Hb_000327_070--Hb_053929_010 Hb_126398_020 Hb_126398_020 Hb_000327_070--Hb_126398_020 Hb_003845_020 Hb_003845_020 Hb_000327_070--Hb_003845_020 Hb_001776_010 Hb_001776_010 Hb_000327_070--Hb_001776_010 Hb_000853_060 Hb_000853_060 Hb_000327_070--Hb_000853_060 Hb_000347_110 Hb_000347_110 Hb_004041_100--Hb_000347_110 Hb_000625_030 Hb_000625_030 Hb_004041_100--Hb_000625_030 Hb_000181_020 Hb_000181_020 Hb_004041_100--Hb_000181_020 Hb_000173_260 Hb_000173_260 Hb_004041_100--Hb_000173_260 Hb_008749_020 Hb_008749_020 Hb_004041_100--Hb_008749_020 Hb_001500_070 Hb_001500_070 Hb_004041_100--Hb_001500_070 Hb_000656_200 Hb_000656_200 Hb_053929_010--Hb_000656_200 Hb_053929_010--Hb_126398_020 Hb_000375_250 Hb_000375_250 Hb_053929_010--Hb_000375_250 Hb_170878_070 Hb_170878_070 Hb_053929_010--Hb_170878_070 Hb_101449_010 Hb_101449_010 Hb_053929_010--Hb_101449_010 Hb_006700_040 Hb_006700_040 Hb_126398_020--Hb_006700_040 Hb_126398_020--Hb_000656_200 Hb_152868_030 Hb_152868_030 Hb_126398_020--Hb_152868_030 Hb_002232_160 Hb_002232_160 Hb_126398_020--Hb_002232_160 Hb_181110_010 Hb_181110_010 Hb_003845_020--Hb_181110_010 Hb_003845_020--Hb_000853_060 Hb_002304_140 Hb_002304_140 Hb_003845_020--Hb_002304_140 Hb_000165_210 Hb_000165_210 Hb_003845_020--Hb_000165_210 Hb_003120_040 Hb_003120_040 Hb_003845_020--Hb_003120_040 Hb_000331_510 Hb_000331_510 Hb_001776_010--Hb_000331_510 Hb_000161_240 Hb_000161_240 Hb_001776_010--Hb_000161_240 Hb_001776_010--Hb_008749_020 Hb_001776_010--Hb_004041_100 Hb_000094_150 Hb_000094_150 Hb_001776_010--Hb_000094_150 Hb_001195_140 Hb_001195_140 Hb_001776_010--Hb_001195_140 Hb_000853_060--Hb_000165_210 Hb_007919_040 Hb_007919_040 Hb_000853_060--Hb_007919_040 Hb_000853_060--Hb_003120_040 Hb_006573_300 Hb_006573_300 Hb_000853_060--Hb_006573_300 Hb_001114_070 Hb_001114_070 Hb_000853_060--Hb_001114_070 Hb_029584_090 Hb_029584_090 Hb_000853_060--Hb_029584_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.281326 1.23699 1.16377 0.480092 0.0296984 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.408304 0.428061 0.0967337 2.75115 0.966081

CAGE analysis