Hb_000656_200

Information

Type -
Description -
Location Contig656: 130651-137039
Sequence    

Annotation

kegg
ID rcu:RCOM_0391810
description inter-alpha-trypsin inhibitor heavy chain, putative
nr
ID XP_012068859.1
description PREDICTED: uncharacterized protein LOC105631373 [Jatropha curcas]
swissprot
ID A6X935
description Inter alpha-trypsin inhibitor, heavy chain 4 OS=Mus musculus GN=Itih4 PE=1 SV=2
trembl
ID A0A067L865
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24679 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52728: 132284-135200 , PASA_asmbl_52729: 130723-137019 , PASA_asmbl_52730: 130723-134313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_200 0.0 - - PREDICTED: uncharacterized protein LOC105631373 [Jatropha curcas]
2 Hb_053929_010 0.1032124283 - - hypothetical protein POPTR_0010s22320g [Populus trichocarpa]
3 Hb_033594_100 0.1627846521 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_006700_040 0.1646037493 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
5 Hb_008494_090 0.1675955866 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
6 Hb_067664_010 0.1681401776 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
7 Hb_000365_220 0.1746277074 - - protein phosphatase-1, putative [Ricinus communis]
8 Hb_000522_010 0.1765529792 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
9 Hb_101449_010 0.1768115888 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
10 Hb_001307_200 0.1779704727 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
11 Hb_000203_210 0.1789230249 - - PREDICTED: uncharacterized protein LOC105040619 isoform X3 [Elaeis guineensis]
12 Hb_011853_010 0.1797229904 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
13 Hb_000032_600 0.1805657299 - - PREDICTED: B2 protein [Jatropha curcas]
14 Hb_002888_060 0.1809767147 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
15 Hb_126398_020 0.1814793945 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001141_040 0.1814990795 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
17 Hb_073973_020 0.185943641 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
18 Hb_001040_150 0.1913410766 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000997_290 0.1937256384 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
20 Hb_002811_200 0.195873593 - - PREDICTED: protein IQ-DOMAIN 14-like [Jatropha curcas]

Gene co-expression network

sample Hb_000656_200 Hb_000656_200 Hb_053929_010 Hb_053929_010 Hb_000656_200--Hb_053929_010 Hb_033594_100 Hb_033594_100 Hb_000656_200--Hb_033594_100 Hb_006700_040 Hb_006700_040 Hb_000656_200--Hb_006700_040 Hb_008494_090 Hb_008494_090 Hb_000656_200--Hb_008494_090 Hb_067664_010 Hb_067664_010 Hb_000656_200--Hb_067664_010 Hb_000365_220 Hb_000365_220 Hb_000656_200--Hb_000365_220 Hb_000327_070 Hb_000327_070 Hb_053929_010--Hb_000327_070 Hb_126398_020 Hb_126398_020 Hb_053929_010--Hb_126398_020 Hb_000375_250 Hb_000375_250 Hb_053929_010--Hb_000375_250 Hb_170878_070 Hb_170878_070 Hb_053929_010--Hb_170878_070 Hb_101449_010 Hb_101449_010 Hb_053929_010--Hb_101449_010 Hb_002518_180 Hb_002518_180 Hb_033594_100--Hb_002518_180 Hb_011853_010 Hb_011853_010 Hb_033594_100--Hb_011853_010 Hb_001040_150 Hb_001040_150 Hb_033594_100--Hb_001040_150 Hb_001677_230 Hb_001677_230 Hb_033594_100--Hb_001677_230 Hb_033594_100--Hb_101449_010 Hb_082683_010 Hb_082683_010 Hb_033594_100--Hb_082683_010 Hb_006700_040--Hb_011853_010 Hb_006700_040--Hb_001040_150 Hb_006700_040--Hb_033594_100 Hb_006700_040--Hb_126398_020 Hb_152868_030 Hb_152868_030 Hb_006700_040--Hb_152868_030 Hb_008494_090--Hb_000365_220 Hb_000522_010 Hb_000522_010 Hb_008494_090--Hb_000522_010 Hb_025045_010 Hb_025045_010 Hb_008494_090--Hb_025045_010 Hb_003680_010 Hb_003680_010 Hb_008494_090--Hb_003680_010 Hb_008494_090--Hb_067664_010 Hb_002888_040 Hb_002888_040 Hb_008494_090--Hb_002888_040 Hb_000032_600 Hb_000032_600 Hb_067664_010--Hb_000032_600 Hb_001054_060 Hb_001054_060 Hb_067664_010--Hb_001054_060 Hb_000977_150 Hb_000977_150 Hb_067664_010--Hb_000977_150 Hb_001754_120 Hb_001754_120 Hb_067664_010--Hb_001754_120 Hb_000997_290 Hb_000997_290 Hb_067664_010--Hb_000997_290 Hb_001124_140 Hb_001124_140 Hb_067664_010--Hb_001124_140 Hb_000365_220--Hb_000522_010 Hb_000417_410 Hb_000417_410 Hb_000365_220--Hb_000417_410 Hb_000365_220--Hb_002888_040 Hb_003517_100 Hb_003517_100 Hb_000365_220--Hb_003517_100 Hb_004525_020 Hb_004525_020 Hb_000365_220--Hb_004525_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.42441 24.8579 24.5303 14.7001 0.63822 0.362264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.95061 1.87185 2.03754 47.2678 49.4246

CAGE analysis