Hb_000375_250

Information

Type -
Description -
Location Contig375: 263392-265594
Sequence    

Annotation

kegg
ID eus:EUTSA_v10014451mg
description hypothetical protein
nr
ID 2G4L
description Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
swissprot
ID P52704
description (S)-hydroxynitrile lyase OS=Hevea brasiliensis GN=HNL PE=1 SV=1
trembl
ID O49897
description Alpha-hydroxynitrile lyase OS=Manihot esculenta GN=HNL4 PE=4 SV=1
Gene Ontology
ID GO:0046593
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38259: 263383-265458 , PASA_asmbl_38260: 263901-264184 , PASA_asmbl_38261: 264242-265458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000375_250 0.0 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
2 Hb_003494_180 0.1421707551 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
3 Hb_031201_010 0.1609068193 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
4 Hb_001856_110 0.1623946601 - - PREDICTED: cellulose synthase-like protein G2 [Populus euphratica]
5 Hb_007205_020 0.1638695173 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
6 Hb_002845_020 0.1672658515 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
7 Hb_057321_010 0.1702392421 - - receptor serine/threonine kinase, putative [Ricinus communis]
8 Hb_003913_040 0.1748626089 - - ferric reductase oxidase [Manihot esculenta]
9 Hb_001866_100 0.1796017036 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
10 Hb_053929_010 0.1848652894 - - hypothetical protein POPTR_0010s22320g [Populus trichocarpa]
11 Hb_064106_010 0.1852896385 - - PREDICTED: uncharacterized protein LOC104878249 [Vitis vinifera]
12 Hb_001301_010 0.1853783821 - - receptor protein kinase, putative [Ricinus communis]
13 Hb_005436_030 0.1872563694 - - PREDICTED: UDP-glycosyltransferase 74E1-like [Jatropha curcas]
14 Hb_016637_020 0.1874311318 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
15 Hb_119327_010 0.1887310366 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
16 Hb_000527_120 0.190274354 - - hypothetical protein VITISV_027174 [Vitis vinifera]
17 Hb_001009_060 0.1903214049 - - PREDICTED: 4-coumarate--CoA ligase-like 9 [Jatropha curcas]
18 Hb_000009_390 0.1923105928 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
19 Hb_000191_100 0.1957365549 - - cytochrome P450, putative [Ricinus communis]
20 Hb_001514_150 0.200592151 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]

Gene co-expression network

sample Hb_000375_250 Hb_000375_250 Hb_003494_180 Hb_003494_180 Hb_000375_250--Hb_003494_180 Hb_031201_010 Hb_031201_010 Hb_000375_250--Hb_031201_010 Hb_001856_110 Hb_001856_110 Hb_000375_250--Hb_001856_110 Hb_007205_020 Hb_007205_020 Hb_000375_250--Hb_007205_020 Hb_002845_020 Hb_002845_020 Hb_000375_250--Hb_002845_020 Hb_057321_010 Hb_057321_010 Hb_000375_250--Hb_057321_010 Hb_003494_180--Hb_002845_020 Hb_016637_020 Hb_016637_020 Hb_003494_180--Hb_016637_020 Hb_003494_180--Hb_007205_020 Hb_001866_100 Hb_001866_100 Hb_003494_180--Hb_001866_100 Hb_003494_180--Hb_057321_010 Hb_003494_180--Hb_001856_110 Hb_031201_010--Hb_007205_020 Hb_119327_010 Hb_119327_010 Hb_031201_010--Hb_119327_010 Hb_003680_010 Hb_003680_010 Hb_031201_010--Hb_003680_010 Hb_007035_010 Hb_007035_010 Hb_031201_010--Hb_007035_010 Hb_000776_020 Hb_000776_020 Hb_031201_010--Hb_000776_020 Hb_006827_030 Hb_006827_030 Hb_031201_010--Hb_006827_030 Hb_000009_390 Hb_000009_390 Hb_001856_110--Hb_000009_390 Hb_071130_020 Hb_071130_020 Hb_001856_110--Hb_071130_020 Hb_003683_200 Hb_003683_200 Hb_001856_110--Hb_003683_200 Hb_031949_010 Hb_031949_010 Hb_001856_110--Hb_031949_010 Hb_000680_020 Hb_000680_020 Hb_001856_110--Hb_000680_020 Hb_007205_020--Hb_002845_020 Hb_007205_020--Hb_016637_020 Hb_007205_020--Hb_001866_100 Hb_005496_170 Hb_005496_170 Hb_007205_020--Hb_005496_170 Hb_002845_020--Hb_001866_100 Hb_000049_170 Hb_000049_170 Hb_002845_020--Hb_000049_170 Hb_001301_010 Hb_001301_010 Hb_002845_020--Hb_001301_010 Hb_002845_020--Hb_016637_020 Hb_000417_250 Hb_000417_250 Hb_057321_010--Hb_000417_250 Hb_000116_330 Hb_000116_330 Hb_057321_010--Hb_000116_330 Hb_057321_010--Hb_001856_110 Hb_057321_010--Hb_003683_200 Hb_000261_370 Hb_000261_370 Hb_057321_010--Hb_000261_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0255043 8.83808 6.97637 1.48762 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.72862 0.440962 0 12.9993 21.3708

CAGE analysis