Hb_001195_140

Information

Type -
Description -
Location Contig1195: 65679-70564
Sequence    

Annotation

kegg
ID pop:POPTR_0005s24970g
description POPTRDRAFT_559734; hypothetical protein
nr
ID XP_012071870.1
description PREDICTED: U-box domain-containing protein 5-like [Jatropha curcas]
swissprot
ID O23225
description U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5 PE=3 SV=3
trembl
ID A0A067KQV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04442 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 5-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05786: 67357-68814 , PASA_asmbl_05787: 70310-70502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_140 0.0 - - PREDICTED: U-box domain-containing protein 5-like [Jatropha curcas]
2 Hb_001840_110 0.1416094826 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
3 Hb_083078_010 0.1581300035 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
4 Hb_000161_240 0.1627170966 - - PREDICTED: ion channel DMI1-like isoform X1 [Jatropha curcas]
5 Hb_004064_060 0.1646009033 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001205_180 0.1687610944 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
7 Hb_001776_010 0.1698320221 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
8 Hb_000996_160 0.1724452265 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004162_220 0.1727167554 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
10 Hb_017914_010 0.1745127094 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
11 Hb_004096_220 0.1761425497 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
12 Hb_001369_230 0.1803275631 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
13 Hb_007290_070 0.1819119386 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
14 Hb_004837_020 0.1853895446 - - PREDICTED: uncharacterized protein LOC105648271 [Jatropha curcas]
15 Hb_003266_020 0.1858680021 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
16 Hb_005883_110 0.1863360699 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
17 Hb_001488_210 0.1892072928 - - PREDICTED: protein RIK [Jatropha curcas]
18 Hb_004800_130 0.1893804668 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
19 Hb_004117_270 0.1894680375 - - -
20 Hb_143629_020 0.1910639608 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_140 Hb_001195_140 Hb_001840_110 Hb_001840_110 Hb_001195_140--Hb_001840_110 Hb_083078_010 Hb_083078_010 Hb_001195_140--Hb_083078_010 Hb_000161_240 Hb_000161_240 Hb_001195_140--Hb_000161_240 Hb_004064_060 Hb_004064_060 Hb_001195_140--Hb_004064_060 Hb_001205_180 Hb_001205_180 Hb_001195_140--Hb_001205_180 Hb_001776_010 Hb_001776_010 Hb_001195_140--Hb_001776_010 Hb_004096_220 Hb_004096_220 Hb_001840_110--Hb_004096_220 Hb_001840_110--Hb_083078_010 Hb_001840_110--Hb_004064_060 Hb_073973_020 Hb_073973_020 Hb_001840_110--Hb_073973_020 Hb_000008_430 Hb_000008_430 Hb_001840_110--Hb_000008_430 Hb_007290_070 Hb_007290_070 Hb_083078_010--Hb_007290_070 Hb_115513_040 Hb_115513_040 Hb_083078_010--Hb_115513_040 Hb_000227_320 Hb_000227_320 Hb_083078_010--Hb_000227_320 Hb_083078_010--Hb_001205_180 Hb_083078_010--Hb_004096_220 Hb_005288_050 Hb_005288_050 Hb_083078_010--Hb_005288_050 Hb_000007_410 Hb_000007_410 Hb_000161_240--Hb_000007_410 Hb_104920_010 Hb_104920_010 Hb_000161_240--Hb_104920_010 Hb_012799_150 Hb_012799_150 Hb_000161_240--Hb_012799_150 Hb_004117_270 Hb_004117_270 Hb_000161_240--Hb_004117_270 Hb_158445_020 Hb_158445_020 Hb_000161_240--Hb_158445_020 Hb_000258_090 Hb_000258_090 Hb_000161_240--Hb_000258_090 Hb_004064_060--Hb_083078_010 Hb_143629_020 Hb_143629_020 Hb_004064_060--Hb_143629_020 Hb_004064_060--Hb_000161_240 Hb_001675_100 Hb_001675_100 Hb_004064_060--Hb_001675_100 Hb_004064_060--Hb_000258_090 Hb_004064_060--Hb_007290_070 Hb_004800_130 Hb_004800_130 Hb_001205_180--Hb_004800_130 Hb_001133_090 Hb_001133_090 Hb_001205_180--Hb_001133_090 Hb_002553_010 Hb_002553_010 Hb_001205_180--Hb_002553_010 Hb_010775_010 Hb_010775_010 Hb_001205_180--Hb_010775_010 Hb_001488_210 Hb_001488_210 Hb_001205_180--Hb_001488_210 Hb_000331_510 Hb_000331_510 Hb_001776_010--Hb_000331_510 Hb_001776_010--Hb_000161_240 Hb_008749_020 Hb_008749_020 Hb_001776_010--Hb_008749_020 Hb_004041_100 Hb_004041_100 Hb_001776_010--Hb_004041_100 Hb_000094_150 Hb_000094_150 Hb_001776_010--Hb_000094_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.11244 14.1293 18.0835 3.30414 3.61197 2.09907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.68544 1.48233 0.63757 19.2165 13.696

CAGE analysis