Hb_001675_100

Information

Type -
Description -
Location Contig1675: 64574-67170
Sequence    

Annotation

kegg
ID rcu:RCOM_1493800
description hypothetical protein
nr
ID XP_002516026.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9CA89
description Rop guanine nucleotide exchange factor 12 OS=Arabidopsis thaliana GN=ROPGEF12 PE=1 SV=1
trembl
ID B9RQK7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1493800 PE=4 SV=1
Gene Ontology
ID GO:0005886
description rop guanine nucleotide exchange factor 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15514: 65593-66023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000133_090 0.1345482393 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
3 Hb_004064_060 0.1441216903 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000243_400 0.1491062711 - - PREDICTED: nucleolin-like [Jatropha curcas]
5 Hb_083078_010 0.1510427993 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
6 Hb_000072_020 0.1529460037 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
7 Hb_001205_180 0.1569909349 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
8 Hb_006794_020 0.1616618733 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
9 Hb_122273_020 0.1640531908 transcription factor TF Family: RWP-RK PREDICTED: protein NLP2 [Jatropha curcas]
10 Hb_115513_040 0.1650246875 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000823_010 0.1661132657 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
12 Hb_002447_150 0.1669167399 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
13 Hb_001646_010 0.168985503 - - hypothetical protein JCGZ_16333 [Jatropha curcas]
14 Hb_002316_170 0.1694809724 - - purine permease, putative [Ricinus communis]
15 Hb_033234_010 0.1695229236 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]
16 Hb_002025_270 0.1706658064 - - PREDICTED: uncharacterized protein At4g15970 isoform X1 [Jatropha curcas]
17 Hb_000227_320 0.1723107842 - - unnamed protein product [Vitis vinifera]
18 Hb_004800_130 0.1735322697 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
19 Hb_000574_370 0.1740678891 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
20 Hb_001307_200 0.1756900707 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]

Gene co-expression network

sample Hb_001675_100 Hb_001675_100 Hb_000133_090 Hb_000133_090 Hb_001675_100--Hb_000133_090 Hb_004064_060 Hb_004064_060 Hb_001675_100--Hb_004064_060 Hb_000243_400 Hb_000243_400 Hb_001675_100--Hb_000243_400 Hb_083078_010 Hb_083078_010 Hb_001675_100--Hb_083078_010 Hb_000072_020 Hb_000072_020 Hb_001675_100--Hb_000072_020 Hb_001205_180 Hb_001205_180 Hb_001675_100--Hb_001205_180 Hb_000133_090--Hb_000243_400 Hb_000413_250 Hb_000413_250 Hb_000133_090--Hb_000413_250 Hb_000331_100 Hb_000331_100 Hb_000133_090--Hb_000331_100 Hb_006794_020 Hb_006794_020 Hb_000133_090--Hb_006794_020 Hb_000133_090--Hb_000072_020 Hb_003964_110 Hb_003964_110 Hb_000133_090--Hb_003964_110 Hb_004064_060--Hb_083078_010 Hb_143629_020 Hb_143629_020 Hb_004064_060--Hb_143629_020 Hb_000161_240 Hb_000161_240 Hb_004064_060--Hb_000161_240 Hb_000258_090 Hb_000258_090 Hb_004064_060--Hb_000258_090 Hb_007290_070 Hb_007290_070 Hb_004064_060--Hb_007290_070 Hb_004586_090 Hb_004586_090 Hb_000243_400--Hb_004586_090 Hb_000200_110 Hb_000200_110 Hb_000243_400--Hb_000200_110 Hb_000243_400--Hb_000413_250 Hb_000243_400--Hb_143629_020 Hb_000243_400--Hb_006794_020 Hb_083078_010--Hb_007290_070 Hb_115513_040 Hb_115513_040 Hb_083078_010--Hb_115513_040 Hb_000227_320 Hb_000227_320 Hb_083078_010--Hb_000227_320 Hb_083078_010--Hb_001205_180 Hb_004096_220 Hb_004096_220 Hb_083078_010--Hb_004096_220 Hb_005288_050 Hb_005288_050 Hb_083078_010--Hb_005288_050 Hb_033363_010 Hb_033363_010 Hb_000072_020--Hb_033363_010 Hb_000072_020--Hb_000227_320 Hb_000072_020--Hb_003964_110 Hb_002235_310 Hb_002235_310 Hb_000072_020--Hb_002235_310 Hb_000805_190 Hb_000805_190 Hb_000072_020--Hb_000805_190 Hb_004800_130 Hb_004800_130 Hb_001205_180--Hb_004800_130 Hb_001133_090 Hb_001133_090 Hb_001205_180--Hb_001133_090 Hb_002553_010 Hb_002553_010 Hb_001205_180--Hb_002553_010 Hb_010775_010 Hb_010775_010 Hb_001205_180--Hb_010775_010 Hb_001488_210 Hb_001488_210 Hb_001205_180--Hb_001488_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0658502 0.806975 0.49471 0.42627 0.285321 0.115763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0571907 0 0.127163 0.762546 0.47211

CAGE analysis