Hb_004064_060

Information

Type -
Description -
Location Contig4064: 113605-116938
Sequence    

Annotation

kegg
ID rcu:RCOM_0566120
description hypothetical protein
nr
ID XP_002530478.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LM25
description ERAD-associated E3 ubiquitin-protein ligase component HRD3A OS=Arabidopsis thaliana GN=HRD3A PE=1 SV=1
trembl
ID B9SWV9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0566120 PE=4 SV=1
Gene Ontology
ID GO:0004519
description suppressor of lin-12-like family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40318: 113646-114002
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004064_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_083078_010 0.1266459971 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
3 Hb_143629_020 0.1334791988 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
4 Hb_000161_240 0.1422086959 - - PREDICTED: ion channel DMI1-like isoform X1 [Jatropha curcas]
5 Hb_001675_100 0.1441216903 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000258_090 0.1447502179 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
7 Hb_007290_070 0.1465029093 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
8 Hb_006794_020 0.1475468249 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
9 Hb_158445_020 0.1510782646 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000007_410 0.1520176331 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
11 Hb_001205_180 0.1522510288 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
12 Hb_004586_090 0.1539064051 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
13 Hb_001123_190 0.1544594235 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
14 Hb_000243_400 0.1558979253 - - PREDICTED: nucleolin-like [Jatropha curcas]
15 Hb_000271_120 0.1580461581 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
16 Hb_000823_010 0.1608669933 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
17 Hb_002025_270 0.1609648385 - - PREDICTED: uncharacterized protein At4g15970 isoform X1 [Jatropha curcas]
18 Hb_005298_020 0.1620958186 - - PREDICTED: anaphase-promoting complex subunit 2 [Jatropha curcas]
19 Hb_017914_010 0.1622205099 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
20 Hb_004800_130 0.1626832871 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]

Gene co-expression network

sample Hb_004064_060 Hb_004064_060 Hb_083078_010 Hb_083078_010 Hb_004064_060--Hb_083078_010 Hb_143629_020 Hb_143629_020 Hb_004064_060--Hb_143629_020 Hb_000161_240 Hb_000161_240 Hb_004064_060--Hb_000161_240 Hb_001675_100 Hb_001675_100 Hb_004064_060--Hb_001675_100 Hb_000258_090 Hb_000258_090 Hb_004064_060--Hb_000258_090 Hb_007290_070 Hb_007290_070 Hb_004064_060--Hb_007290_070 Hb_083078_010--Hb_007290_070 Hb_115513_040 Hb_115513_040 Hb_083078_010--Hb_115513_040 Hb_000227_320 Hb_000227_320 Hb_083078_010--Hb_000227_320 Hb_001205_180 Hb_001205_180 Hb_083078_010--Hb_001205_180 Hb_004096_220 Hb_004096_220 Hb_083078_010--Hb_004096_220 Hb_005288_050 Hb_005288_050 Hb_083078_010--Hb_005288_050 Hb_004586_090 Hb_004586_090 Hb_143629_020--Hb_004586_090 Hb_006794_020 Hb_006794_020 Hb_143629_020--Hb_006794_020 Hb_000428_030 Hb_000428_030 Hb_143629_020--Hb_000428_030 Hb_160608_010 Hb_160608_010 Hb_143629_020--Hb_160608_010 Hb_002809_160 Hb_002809_160 Hb_143629_020--Hb_002809_160 Hb_002078_470 Hb_002078_470 Hb_143629_020--Hb_002078_470 Hb_000007_410 Hb_000007_410 Hb_000161_240--Hb_000007_410 Hb_104920_010 Hb_104920_010 Hb_000161_240--Hb_104920_010 Hb_012799_150 Hb_012799_150 Hb_000161_240--Hb_012799_150 Hb_004117_270 Hb_004117_270 Hb_000161_240--Hb_004117_270 Hb_158445_020 Hb_158445_020 Hb_000161_240--Hb_158445_020 Hb_000161_240--Hb_000258_090 Hb_000133_090 Hb_000133_090 Hb_001675_100--Hb_000133_090 Hb_000243_400 Hb_000243_400 Hb_001675_100--Hb_000243_400 Hb_001675_100--Hb_083078_010 Hb_000072_020 Hb_000072_020 Hb_001675_100--Hb_000072_020 Hb_001675_100--Hb_001205_180 Hb_000258_090--Hb_000007_410 Hb_003964_110 Hb_003964_110 Hb_000258_090--Hb_003964_110 Hb_027760_060 Hb_027760_060 Hb_000258_090--Hb_027760_060 Hb_158845_060 Hb_158845_060 Hb_000258_090--Hb_158845_060 Hb_000599_360 Hb_000599_360 Hb_000258_090--Hb_000599_360 Hb_005504_030 Hb_005504_030 Hb_000258_090--Hb_005504_030 Hb_001499_070 Hb_001499_070 Hb_007290_070--Hb_001499_070 Hb_001408_020 Hb_001408_020 Hb_007290_070--Hb_001408_020 Hb_000477_070 Hb_000477_070 Hb_007290_070--Hb_000477_070 Hb_005214_070 Hb_005214_070 Hb_007290_070--Hb_005214_070 Hb_187005_010 Hb_187005_010 Hb_007290_070--Hb_187005_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.461016 4.92444 5.8782 2.04645 1.79835 1.17421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.58938 0.408086 1.33522 6.37856 4.18961

CAGE analysis