Hb_000161_240

Information

Type -
Description -
Location Contig161: 255288-263808
Sequence    

Annotation

kegg
ID rcu:RCOM_0759760
description hypothetical protein
nr
ID XP_012066654.1
description PREDICTED: ion channel DMI1-like isoform X1 [Jatropha curcas]
swissprot
ID Q6RHR6
description Ion channel DMI1 OS=Medicago truncatula GN=DMI1 PE=2 SV=1
trembl
ID A0A067L5C3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00230 PE=4 SV=1
Gene Ontology
ID GO:0006812
description ion channel dmi1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14444: 255740-263287 , PASA_asmbl_14445: 263378-263674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000161_240 0.0 - - PREDICTED: ion channel DMI1-like isoform X1 [Jatropha curcas]
2 Hb_000007_410 0.1118574267 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
3 Hb_104920_010 0.1121682039 - - hypothetical protein VITISV_031859 [Vitis vinifera]
4 Hb_012799_150 0.1140881805 - - PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 13 [Jatropha curcas]
5 Hb_004117_270 0.1176829064 - - -
6 Hb_158445_020 0.1224067451 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000258_090 0.123340945 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
8 Hb_025787_010 0.1238458712 - - PREDICTED: histone H1.2-like [Jatropha curcas]
9 Hb_004577_010 0.1246439294 - - PREDICTED: transmembrane protein 45A [Prunus mume]
10 Hb_003725_010 0.1247480136 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
11 Hb_000270_700 0.1250130789 - - PREDICTED: protease Do-like 9 [Populus euphratica]
12 Hb_002107_100 0.1260375948 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
13 Hb_001123_190 0.1305543503 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
14 Hb_017914_010 0.1320869654 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
15 Hb_000098_180 0.1323341184 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
16 Hb_003226_090 0.1327675135 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
17 Hb_024714_070 0.1334895878 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
18 Hb_000477_070 0.1337019661 - - histone h2a, putative [Ricinus communis]
19 Hb_080147_020 0.1353394108 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
20 Hb_052135_020 0.1354269721 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]

Gene co-expression network

sample Hb_000161_240 Hb_000161_240 Hb_000007_410 Hb_000007_410 Hb_000161_240--Hb_000007_410 Hb_104920_010 Hb_104920_010 Hb_000161_240--Hb_104920_010 Hb_012799_150 Hb_012799_150 Hb_000161_240--Hb_012799_150 Hb_004117_270 Hb_004117_270 Hb_000161_240--Hb_004117_270 Hb_158445_020 Hb_158445_020 Hb_000161_240--Hb_158445_020 Hb_000258_090 Hb_000258_090 Hb_000161_240--Hb_000258_090 Hb_004586_090 Hb_004586_090 Hb_000007_410--Hb_004586_090 Hb_000015_200 Hb_000015_200 Hb_000007_410--Hb_000015_200 Hb_000271_120 Hb_000271_120 Hb_000007_410--Hb_000271_120 Hb_000007_410--Hb_000258_090 Hb_003964_110 Hb_003964_110 Hb_000007_410--Hb_003964_110 Hb_000599_360 Hb_000599_360 Hb_000007_410--Hb_000599_360 Hb_002107_100 Hb_002107_100 Hb_104920_010--Hb_002107_100 Hb_104920_010--Hb_012799_150 Hb_025787_010 Hb_025787_010 Hb_104920_010--Hb_025787_010 Hb_104920_010--Hb_004117_270 Hb_000418_050 Hb_000418_050 Hb_104920_010--Hb_000418_050 Hb_001369_030 Hb_001369_030 Hb_104920_010--Hb_001369_030 Hb_003725_010 Hb_003725_010 Hb_012799_150--Hb_003725_010 Hb_172979_010 Hb_172979_010 Hb_012799_150--Hb_172979_010 Hb_003417_030 Hb_003417_030 Hb_012799_150--Hb_003417_030 Hb_003687_120 Hb_003687_120 Hb_012799_150--Hb_003687_120 Hb_012799_150--Hb_025787_010 Hb_004117_270--Hb_025787_010 Hb_000260_160 Hb_000260_160 Hb_004117_270--Hb_000260_160 Hb_015807_080 Hb_015807_080 Hb_004117_270--Hb_015807_080 Hb_004117_270--Hb_012799_150 Hb_008120_040 Hb_008120_040 Hb_004117_270--Hb_008120_040 Hb_008054_040 Hb_008054_040 Hb_158445_020--Hb_008054_040 Hb_001396_010 Hb_001396_010 Hb_158445_020--Hb_001396_010 Hb_000229_050 Hb_000229_050 Hb_158445_020--Hb_000229_050 Hb_003839_010 Hb_003839_010 Hb_158445_020--Hb_003839_010 Hb_016734_020 Hb_016734_020 Hb_158445_020--Hb_016734_020 Hb_158445_020--Hb_002107_100 Hb_000258_090--Hb_003964_110 Hb_027760_060 Hb_027760_060 Hb_000258_090--Hb_027760_060 Hb_158845_060 Hb_158845_060 Hb_000258_090--Hb_158845_060 Hb_000258_090--Hb_000599_360 Hb_005504_030 Hb_005504_030 Hb_000258_090--Hb_005504_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.81149 7.75058 11.142 4.64622 1.41366 1.5177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.86202 1.08922 2.19616 8.17401 6.63927

CAGE analysis