Hb_001840_110

Information

Type -
Description -
Location Contig1840: 200604-204046
Sequence    

Annotation

kegg
ID rcu:RCOM_0265270
description S-locus-specific glycoprotein S13 precursor, putative (EC:2.7.10.2)
nr
ID KDP27374.1
description hypothetical protein JCGZ_20198 [Jatropha curcas]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID A0A067K6D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20198 PE=4 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase rks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18029: 200665-201346 , PASA_asmbl_18031: 203405-203620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001840_110 0.0 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
2 Hb_001195_140 0.1416094826 - - PREDICTED: U-box domain-containing protein 5-like [Jatropha curcas]
3 Hb_004096_220 0.1504229573 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
4 Hb_083078_010 0.1611304622 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
5 Hb_004064_060 0.1628382944 - - conserved hypothetical protein [Ricinus communis]
6 Hb_073973_020 0.1677826282 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
7 Hb_000008_430 0.1683105406 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
8 Hb_000879_030 0.173793566 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
9 Hb_002078_240 0.1738759043 rubber biosynthesis Gene Name: SRPP4 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
10 Hb_000165_070 0.1748425581 - - hypothetical protein JCGZ_01211 [Jatropha curcas]
11 Hb_007290_070 0.1752073554 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
12 Hb_001307_200 0.1759429443 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
13 Hb_006681_030 0.177305013 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Populus euphratica]
14 Hb_001268_300 0.1773375192 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001123_190 0.1789128259 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
16 Hb_012033_010 0.1814787904 - - PREDICTED: histone H1.2-like [Jatropha curcas]
17 Hb_005523_050 0.1815987933 - - hypothetical protein JCGZ_09175 [Jatropha curcas]
18 Hb_000574_370 0.1817058046 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
19 Hb_000365_220 0.1851822705 - - protein phosphatase-1, putative [Ricinus communis]
20 Hb_000417_410 0.1867553689 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001840_110 Hb_001840_110 Hb_001195_140 Hb_001195_140 Hb_001840_110--Hb_001195_140 Hb_004096_220 Hb_004096_220 Hb_001840_110--Hb_004096_220 Hb_083078_010 Hb_083078_010 Hb_001840_110--Hb_083078_010 Hb_004064_060 Hb_004064_060 Hb_001840_110--Hb_004064_060 Hb_073973_020 Hb_073973_020 Hb_001840_110--Hb_073973_020 Hb_000008_430 Hb_000008_430 Hb_001840_110--Hb_000008_430 Hb_001195_140--Hb_083078_010 Hb_000161_240 Hb_000161_240 Hb_001195_140--Hb_000161_240 Hb_001195_140--Hb_004064_060 Hb_001205_180 Hb_001205_180 Hb_001195_140--Hb_001205_180 Hb_001776_010 Hb_001776_010 Hb_001195_140--Hb_001776_010 Hb_012033_010 Hb_012033_010 Hb_004096_220--Hb_012033_010 Hb_001307_200 Hb_001307_200 Hb_004096_220--Hb_001307_200 Hb_000261_310 Hb_000261_310 Hb_004096_220--Hb_000261_310 Hb_004096_220--Hb_083078_010 Hb_000438_010 Hb_000438_010 Hb_004096_220--Hb_000438_010 Hb_001268_300 Hb_001268_300 Hb_004096_220--Hb_001268_300 Hb_007290_070 Hb_007290_070 Hb_083078_010--Hb_007290_070 Hb_115513_040 Hb_115513_040 Hb_083078_010--Hb_115513_040 Hb_000227_320 Hb_000227_320 Hb_083078_010--Hb_000227_320 Hb_083078_010--Hb_001205_180 Hb_005288_050 Hb_005288_050 Hb_083078_010--Hb_005288_050 Hb_004064_060--Hb_083078_010 Hb_143629_020 Hb_143629_020 Hb_004064_060--Hb_143629_020 Hb_004064_060--Hb_000161_240 Hb_001675_100 Hb_001675_100 Hb_004064_060--Hb_001675_100 Hb_000258_090 Hb_000258_090 Hb_004064_060--Hb_000258_090 Hb_004064_060--Hb_007290_070 Hb_073973_020--Hb_001307_200 Hb_000221_180 Hb_000221_180 Hb_073973_020--Hb_000221_180 Hb_000417_410 Hb_000417_410 Hb_073973_020--Hb_000417_410 Hb_073973_020--Hb_001268_300 Hb_002888_040 Hb_002888_040 Hb_073973_020--Hb_002888_040 Hb_001496_120 Hb_001496_120 Hb_073973_020--Hb_001496_120 Hb_005724_050 Hb_005724_050 Hb_000008_430--Hb_005724_050 Hb_004032_090 Hb_004032_090 Hb_000008_430--Hb_004032_090 Hb_001294_040 Hb_001294_040 Hb_000008_430--Hb_001294_040 Hb_000008_430--Hb_007290_070 Hb_005539_100 Hb_005539_100 Hb_000008_430--Hb_005539_100 Hb_000008_430--Hb_001205_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.148876 1.96541 2.02442 0.451419 0.27185 0.0869975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.13385 0.0658288 0.100497 2.27867 1.62495

CAGE analysis