Hb_124315_030

Information

Type transcription factor
Description TF Family: NAC
Location Contig124315: 17866-19779
Sequence    

Annotation

kegg
ID rcu:RCOM_1122330
description NAC domain-containing protein 21/22, putative
nr
ID XP_002525465.1
description NAC domain-containing protein 21/22, putative [Ricinus communis]
swissprot
ID Q9FLJ2
description NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1
trembl
ID B9SHJ6
description NAC domain-containing protein 21/22, putative OS=Ricinus communis GN=RCOM_1122330 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 100-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07398: 17895-19579
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124315_030 0.0 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
2 Hb_001113_030 0.1298226838 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
3 Hb_003120_040 0.1622139439 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
4 Hb_052764_080 0.1650340353 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
5 Hb_000608_020 0.1779140256 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
6 Hb_011716_050 0.1793176766 - - serine acetyltransferase [Hevea brasiliensis]
7 Hb_009545_020 0.1885373619 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
8 Hb_001558_070 0.1903399307 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
9 Hb_000429_110 0.1906009165 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
10 Hb_009736_010 0.1924657729 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000111_480 0.1926151666 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
12 Hb_000977_090 0.1952989684 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
13 Hb_001355_070 0.1978090659 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 2 [Theobroma cacao]
14 Hb_002928_180 0.2014755991 - - catalase CAT1 [Manihot esculenta]
15 Hb_000059_300 0.2027439284 - - caspase, putative [Ricinus communis]
16 Hb_006573_300 0.2068905584 - - ATP binding protein, putative [Ricinus communis]
17 Hb_001959_120 0.2084879732 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
18 Hb_001049_160 0.2094890591 - - aldose 1-epimerase, putative [Ricinus communis]
19 Hb_000685_060 0.2095478446 - - ring finger protein, putative [Ricinus communis]
20 Hb_000042_250 0.2109646373 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_124315_030 Hb_124315_030 Hb_001113_030 Hb_001113_030 Hb_124315_030--Hb_001113_030 Hb_003120_040 Hb_003120_040 Hb_124315_030--Hb_003120_040 Hb_052764_080 Hb_052764_080 Hb_124315_030--Hb_052764_080 Hb_000608_020 Hb_000608_020 Hb_124315_030--Hb_000608_020 Hb_011716_050 Hb_011716_050 Hb_124315_030--Hb_011716_050 Hb_009545_020 Hb_009545_020 Hb_124315_030--Hb_009545_020 Hb_000111_480 Hb_000111_480 Hb_001113_030--Hb_000111_480 Hb_000672_150 Hb_000672_150 Hb_001113_030--Hb_000672_150 Hb_008173_030 Hb_008173_030 Hb_001113_030--Hb_008173_030 Hb_001959_120 Hb_001959_120 Hb_001113_030--Hb_001959_120 Hb_089032_010 Hb_089032_010 Hb_001113_030--Hb_089032_010 Hb_000853_060 Hb_000853_060 Hb_003120_040--Hb_000853_060 Hb_003120_040--Hb_009545_020 Hb_000963_200 Hb_000963_200 Hb_003120_040--Hb_000963_200 Hb_007849_010 Hb_007849_010 Hb_003120_040--Hb_007849_010 Hb_006573_300 Hb_006573_300 Hb_003120_040--Hb_006573_300 Hb_073171_010 Hb_073171_010 Hb_052764_080--Hb_073171_010 Hb_001259_100 Hb_001259_100 Hb_052764_080--Hb_001259_100 Hb_000977_090 Hb_000977_090 Hb_052764_080--Hb_000977_090 Hb_005183_200 Hb_005183_200 Hb_052764_080--Hb_005183_200 Hb_000429_110 Hb_000429_110 Hb_052764_080--Hb_000429_110 Hb_000720_210 Hb_000720_210 Hb_052764_080--Hb_000720_210 Hb_002660_100 Hb_002660_100 Hb_000608_020--Hb_002660_100 Hb_001377_500 Hb_001377_500 Hb_000608_020--Hb_001377_500 Hb_000608_020--Hb_000429_110 Hb_001558_070 Hb_001558_070 Hb_000608_020--Hb_001558_070 Hb_000608_020--Hb_001259_100 Hb_002928_180 Hb_002928_180 Hb_000608_020--Hb_002928_180 Hb_000107_440 Hb_000107_440 Hb_011716_050--Hb_000107_440 Hb_029622_020 Hb_029622_020 Hb_011716_050--Hb_029622_020 Hb_006846_020 Hb_006846_020 Hb_011716_050--Hb_006846_020 Hb_000038_040 Hb_000038_040 Hb_011716_050--Hb_000038_040 Hb_006935_010 Hb_006935_010 Hb_011716_050--Hb_006935_010 Hb_011716_050--Hb_001959_120 Hb_031527_060 Hb_031527_060 Hb_009545_020--Hb_031527_060 Hb_009736_010 Hb_009736_010 Hb_009545_020--Hb_009736_010 Hb_009545_020--Hb_000853_060 Hb_004965_060 Hb_004965_060 Hb_009545_020--Hb_004965_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.137317 13.1475 1.79683 4.91361 0.0260567 0.0402877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0104 2.72197 1.22273 8.74767 1.0086

CAGE analysis