Hb_008173_030

Information

Type -
Description -
Location Contig8173: 12160-15182
Sequence    

Annotation

kegg
ID rcu:RCOM_1686430
description glutathione-s-transferase theta, gst, putative (EC:2.5.1.18)
nr
ID XP_012086927.1
description PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
swissprot
ID Q9ZRT5
description Glutathione S-transferase T1 OS=Arabidopsis thaliana GN=GSTT1 PE=2 SV=1
trembl
ID A0A067JZK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20606 PE=4 SV=1
Gene Ontology
ID GO:0004364
description glutathione s-transferase t1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59460: 12197-15220
cDNA
(Sanger)
(ID:Location)		 037_O06.ab1: 12342-15220

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008173_030 0.0 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
2 Hb_002110_240 0.1360808631 - - clathrin assembly protein, putative [Ricinus communis]
3 Hb_000649_240 0.1698618228 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
4 Hb_000868_100 0.1722327547 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
5 Hb_000343_180 0.1760430659 - - NDWp3 [Podospora anserina]
6 Hb_002205_010 0.1785750191 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
7 Hb_000638_210 0.1812859083 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
8 Hb_002639_100 0.1836714188 - - dehydrin [Hevea brasiliensis]
9 Hb_001113_030 0.1839435015 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
10 Hb_000672_150 0.1877646451 - - Patatin T5 precursor, putative [Ricinus communis]
11 Hb_001433_140 0.1905049736 - - PREDICTED: phospholipase D p1 [Jatropha curcas]
12 Hb_002572_050 0.191552035 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
13 Hb_000256_130 0.1917203452 - - hypothetical protein 21 [Hevea brasiliensis]
14 Hb_088753_010 0.1936863893 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
15 Hb_001472_130 0.1965128535 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
16 Hb_001794_060 0.1971952038 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000671_170 0.1983017337 - - kinase, putative [Ricinus communis]
18 Hb_004631_210 0.2005626896 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
19 Hb_031862_040 0.2009076455 - - purine transporter, putative [Ricinus communis]
20 Hb_000402_210 0.2026724534 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]

Gene co-expression network

sample Hb_008173_030 Hb_008173_030 Hb_002110_240 Hb_002110_240 Hb_008173_030--Hb_002110_240 Hb_000649_240 Hb_000649_240 Hb_008173_030--Hb_000649_240 Hb_000868_100 Hb_000868_100 Hb_008173_030--Hb_000868_100 Hb_000343_180 Hb_000343_180 Hb_008173_030--Hb_000343_180 Hb_002205_010 Hb_002205_010 Hb_008173_030--Hb_002205_010 Hb_000638_210 Hb_000638_210 Hb_008173_030--Hb_000638_210 Hb_002110_240--Hb_002205_010 Hb_000256_130 Hb_000256_130 Hb_002110_240--Hb_000256_130 Hb_020400_040 Hb_020400_040 Hb_002110_240--Hb_020400_040 Hb_002110_240--Hb_000343_180 Hb_009233_030 Hb_009233_030 Hb_002110_240--Hb_009233_030 Hb_021888_050 Hb_021888_050 Hb_000649_240--Hb_021888_050 Hb_000432_040 Hb_000432_040 Hb_000649_240--Hb_000432_040 Hb_028487_020 Hb_028487_020 Hb_000649_240--Hb_028487_020 Hb_002097_200 Hb_002097_200 Hb_000649_240--Hb_002097_200 Hb_006788_140 Hb_006788_140 Hb_000649_240--Hb_006788_140 Hb_000451_070 Hb_000451_070 Hb_000649_240--Hb_000451_070 Hb_000671_170 Hb_000671_170 Hb_000868_100--Hb_000671_170 Hb_000694_060 Hb_000694_060 Hb_000868_100--Hb_000694_060 Hb_000671_160 Hb_000671_160 Hb_000868_100--Hb_000671_160 Hb_004460_050 Hb_004460_050 Hb_000868_100--Hb_004460_050 Hb_000049_240 Hb_000049_240 Hb_000868_100--Hb_000049_240 Hb_000802_110 Hb_000802_110 Hb_000343_180--Hb_000802_110 Hb_000732_250 Hb_000732_250 Hb_000343_180--Hb_000732_250 Hb_000975_360 Hb_000975_360 Hb_000343_180--Hb_000975_360 Hb_007558_020 Hb_007558_020 Hb_000343_180--Hb_007558_020 Hb_002205_010--Hb_020400_040 Hb_000179_240 Hb_000179_240 Hb_002205_010--Hb_000179_240 Hb_002205_010--Hb_000256_130 Hb_001472_130 Hb_001472_130 Hb_002205_010--Hb_001472_130 Hb_001123_200 Hb_001123_200 Hb_002205_010--Hb_001123_200 Hb_005656_140 Hb_005656_140 Hb_000638_210--Hb_005656_140 Hb_001369_570 Hb_001369_570 Hb_000638_210--Hb_001369_570 Hb_003078_050 Hb_003078_050 Hb_000638_210--Hb_003078_050 Hb_009838_060 Hb_009838_060 Hb_000638_210--Hb_009838_060 Hb_000634_070 Hb_000634_070 Hb_000638_210--Hb_000634_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.50357 49.8931 5.50931 12.5215 2.47031 1.86094
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5175 20.4404 10.6325 17.6715 1.4986

CAGE analysis