Hb_000694_060

Information

Type -
Description -
Location Contig694: 107144-111195
Sequence    

Annotation

kegg
ID rcu:RCOM_1062920
description Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative (EC:1.6.5.3)
nr
ID XP_002521423.1
description Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
swissprot
ID O80874
description Internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial OS=Arabidopsis thaliana GN=NDA2 PE=2 SV=1
trembl
ID B9S604
description Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial, putative OS=Ricinus communis GN=RCOM_1062920 PE=4 SV=1
Gene Ontology
ID GO:0016491
description internal alternative nad h-ubiquinone oxidoreductase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54538: 105738-107454 , PASA_asmbl_54539: 108999-109725 , PASA_asmbl_54540: 110241-111028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000694_060 0.0 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
2 Hb_002374_380 0.14672013 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
3 Hb_000868_100 0.156105191 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
4 Hb_007017_010 0.1630126737 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
5 Hb_008948_120 0.1752683946 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
6 Hb_000948_080 0.1840516328 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
7 Hb_002236_050 0.1877372174 - - -
8 Hb_007317_080 0.1926866872 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
9 Hb_002267_080 0.1931127421 - - PREDICTED: uncharacterized protein LOC105635094 [Jatropha curcas]
10 Hb_001675_030 0.1949010048 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000402_210 0.1978781828 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]
12 Hb_007153_040 0.1987976971 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
13 Hb_000671_160 0.1995956179 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
14 Hb_000529_280 0.2026764754 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
15 Hb_028707_070 0.2067441524 - - short-chain dehydrogenase, putative [Ricinus communis]
16 Hb_001449_100 0.2076881029 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
17 Hb_000979_110 0.2089910665 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
18 Hb_002701_010 0.2095785735 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
19 Hb_000304_030 0.2098909301 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
20 Hb_002768_090 0.2104962678 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]

Gene co-expression network

sample Hb_000694_060 Hb_000694_060 Hb_002374_380 Hb_002374_380 Hb_000694_060--Hb_002374_380 Hb_000868_100 Hb_000868_100 Hb_000694_060--Hb_000868_100 Hb_007017_010 Hb_007017_010 Hb_000694_060--Hb_007017_010 Hb_008948_120 Hb_008948_120 Hb_000694_060--Hb_008948_120 Hb_000948_080 Hb_000948_080 Hb_000694_060--Hb_000948_080 Hb_002236_050 Hb_002236_050 Hb_000694_060--Hb_002236_050 Hb_001433_110 Hb_001433_110 Hb_002374_380--Hb_001433_110 Hb_004453_080 Hb_004453_080 Hb_002374_380--Hb_004453_080 Hb_105602_010 Hb_105602_010 Hb_002374_380--Hb_105602_010 Hb_003442_070 Hb_003442_070 Hb_002374_380--Hb_003442_070 Hb_007850_080 Hb_007850_080 Hb_002374_380--Hb_007850_080 Hb_000671_170 Hb_000671_170 Hb_000868_100--Hb_000671_170 Hb_000671_160 Hb_000671_160 Hb_000868_100--Hb_000671_160 Hb_008173_030 Hb_008173_030 Hb_000868_100--Hb_008173_030 Hb_004460_050 Hb_004460_050 Hb_000868_100--Hb_004460_050 Hb_000049_240 Hb_000049_240 Hb_000868_100--Hb_000049_240 Hb_002235_080 Hb_002235_080 Hb_007017_010--Hb_002235_080 Hb_003327_050 Hb_003327_050 Hb_007017_010--Hb_003327_050 Hb_000028_100 Hb_000028_100 Hb_007017_010--Hb_000028_100 Hb_000487_230 Hb_000487_230 Hb_007017_010--Hb_000487_230 Hb_000099_070 Hb_000099_070 Hb_007017_010--Hb_000099_070 Hb_183612_060 Hb_183612_060 Hb_007017_010--Hb_183612_060 Hb_008948_120--Hb_002236_050 Hb_017491_020 Hb_017491_020 Hb_008948_120--Hb_017491_020 Hb_000347_450 Hb_000347_450 Hb_008948_120--Hb_000347_450 Hb_002307_310 Hb_002307_310 Hb_008948_120--Hb_002307_310 Hb_168893_020 Hb_168893_020 Hb_008948_120--Hb_168893_020 Hb_000210_060 Hb_000210_060 Hb_008948_120--Hb_000210_060 Hb_021888_050 Hb_021888_050 Hb_000948_080--Hb_021888_050 Hb_000975_360 Hb_000975_360 Hb_000948_080--Hb_000975_360 Hb_000402_210 Hb_000402_210 Hb_000948_080--Hb_000402_210 Hb_110560_010 Hb_110560_010 Hb_000948_080--Hb_110560_010 Hb_000948_080--Hb_002374_380 Hb_028487_020 Hb_028487_020 Hb_000948_080--Hb_028487_020 Hb_011861_120 Hb_011861_120 Hb_002236_050--Hb_011861_120 Hb_000555_100 Hb_000555_100 Hb_002236_050--Hb_000555_100 Hb_002236_050--Hb_000402_210 Hb_006970_080 Hb_006970_080 Hb_002236_050--Hb_006970_080 Hb_004064_010 Hb_004064_010 Hb_002236_050--Hb_004064_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.715288 5.63221 3.07813 2.81195 0.324964 0.595317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.40581 11.2453 2.09694 7.25263 1.37084

CAGE analysis