Hb_110560_010

Information

Type -
Description -
Location Contig110560: 393-4863
Sequence    

Annotation

kegg
ID rcu:RCOM_1575290
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_002513383.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID C0LGH3
description Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=2 SV=2
trembl
ID B9RI14
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1575290 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at1g56130

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03325: 613-2013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_110560_010 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000225_060 0.1025348286 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
3 Hb_008566_050 0.117424954 - - phosphoglycerate mutase, putative [Ricinus communis]
4 Hb_004705_080 0.1180557257 transcription factor TF Family: ARF transcription factor, putative [Ricinus communis]
5 Hb_000099_150 0.1196152245 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
6 Hb_000045_300 0.1202062086 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
7 Hb_091433_020 0.1208340348 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
8 Hb_005365_030 0.1214078301 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
9 Hb_001102_240 0.1235480657 - - PREDICTED: NADH kinase isoform X1 [Jatropha curcas]
10 Hb_011671_100 0.1247772648 - - 60S ribosomal protein L15 [Populus trichocarpa]
11 Hb_000731_190 0.1260124689 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
12 Hb_000327_230 0.1279310879 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
13 Hb_000413_280 0.1292611109 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
14 Hb_000178_130 0.1294834292 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
15 Hb_001691_140 0.1301988503 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
16 Hb_011671_440 0.1304883613 - - ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
17 Hb_001123_130 0.1311571751 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
18 Hb_000032_380 0.1312136921 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002078_140 0.1321810705 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
20 Hb_124953_020 0.1321929981 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]

Gene co-expression network

sample Hb_110560_010 Hb_110560_010 Hb_000225_060 Hb_000225_060 Hb_110560_010--Hb_000225_060 Hb_008566_050 Hb_008566_050 Hb_110560_010--Hb_008566_050 Hb_004705_080 Hb_004705_080 Hb_110560_010--Hb_004705_080 Hb_000099_150 Hb_000099_150 Hb_110560_010--Hb_000099_150 Hb_000045_300 Hb_000045_300 Hb_110560_010--Hb_000045_300 Hb_091433_020 Hb_091433_020 Hb_110560_010--Hb_091433_020 Hb_000225_060--Hb_000099_150 Hb_006538_080 Hb_006538_080 Hb_000225_060--Hb_006538_080 Hb_009620_020 Hb_009620_020 Hb_000225_060--Hb_009620_020 Hb_001102_240 Hb_001102_240 Hb_000225_060--Hb_001102_240 Hb_002701_010 Hb_002701_010 Hb_000225_060--Hb_002701_010 Hb_000039_160 Hb_000039_160 Hb_008566_050--Hb_000039_160 Hb_000117_090 Hb_000117_090 Hb_008566_050--Hb_000117_090 Hb_001437_150 Hb_001437_150 Hb_008566_050--Hb_001437_150 Hb_000155_200 Hb_000155_200 Hb_008566_050--Hb_000155_200 Hb_008566_050--Hb_004705_080 Hb_001123_130 Hb_001123_130 Hb_008566_050--Hb_001123_130 Hb_000413_280 Hb_000413_280 Hb_004705_080--Hb_000413_280 Hb_000111_450 Hb_000111_450 Hb_004705_080--Hb_000111_450 Hb_012760_070 Hb_012760_070 Hb_004705_080--Hb_012760_070 Hb_002016_080 Hb_002016_080 Hb_004705_080--Hb_002016_080 Hb_000424_200 Hb_000424_200 Hb_004705_080--Hb_000424_200 Hb_001691_140 Hb_001691_140 Hb_000099_150--Hb_001691_140 Hb_000136_260 Hb_000136_260 Hb_000099_150--Hb_000136_260 Hb_002027_350 Hb_002027_350 Hb_000099_150--Hb_002027_350 Hb_000327_230 Hb_000327_230 Hb_000099_150--Hb_000327_230 Hb_017987_050 Hb_017987_050 Hb_000099_150--Hb_017987_050 Hb_002078_140 Hb_002078_140 Hb_000099_150--Hb_002078_140 Hb_007943_050 Hb_007943_050 Hb_000045_300--Hb_007943_050 Hb_000327_380 Hb_000327_380 Hb_000045_300--Hb_000327_380 Hb_000045_300--Hb_000327_230 Hb_000733_200 Hb_000733_200 Hb_000045_300--Hb_000733_200 Hb_003362_030 Hb_003362_030 Hb_000045_300--Hb_003362_030 Hb_012565_070 Hb_012565_070 Hb_000045_300--Hb_012565_070 Hb_000417_360 Hb_000417_360 Hb_091433_020--Hb_000417_360 Hb_033642_080 Hb_033642_080 Hb_091433_020--Hb_033642_080 Hb_004767_080 Hb_004767_080 Hb_091433_020--Hb_004767_080 Hb_000731_190 Hb_000731_190 Hb_091433_020--Hb_000731_190 Hb_000496_120 Hb_000496_120 Hb_091433_020--Hb_000496_120 Hb_011671_100 Hb_011671_100 Hb_091433_020--Hb_011671_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.42196 3.47354 3.70187 2.96556 1.4837 2.20842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.65474 7.78275 4.22123 3.1506 0.649986

CAGE analysis