Hb_000671_160

Information

Type -
Description -
Location Contig671: 236506-243575
Sequence    

Annotation

kegg
ID rcu:RCOM_0574930
description receptor serine/threonine kinase, putative
nr
ID XP_012066193.1
description PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
swissprot
ID Q9FLV4
description G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana GN=At5g24080 PE=2 SV=1
trembl
ID B9SUU6
description Receptor serine/threonine kinase, putative OS=Ricinus communis GN=RCOM_0574930 PE=3 SV=1
Gene Ontology
ID GO:0004674
description glycerophosphodiester phosphodiesterase protein kinase domain-containing gdpdl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53435: 236500-238584 , PASA_asmbl_53436: 240218-241694
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000671_160 0.0 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
2 Hb_000671_170 0.1388915857 - - kinase, putative [Ricinus communis]
3 Hb_000868_100 0.1622911781 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
4 Hb_002284_190 0.1912017231 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
5 Hb_000694_060 0.1995956179 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
6 Hb_002660_060 0.203963538 - - PREDICTED: uncharacterized protein LOC105642215 [Jatropha curcas]
7 Hb_002805_020 0.2043891618 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
8 Hb_031527_060 0.2159725045 - - glutamate decarboxylase, putative [Ricinus communis]
9 Hb_000009_050 0.2165543482 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
10 Hb_007153_040 0.2166839022 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
11 Hb_000304_030 0.2168877286 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
12 Hb_000983_080 0.2174910108 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
13 Hb_101733_040 0.2177296892 - - cytochrome P450 CYP71B63v2 [Populus trichocarpa]
14 Hb_012340_060 0.2201184417 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001049_020 0.2225042236 - - conserved hypothetical protein [Ricinus communis]
16 Hb_031862_040 0.2332007066 - - purine transporter, putative [Ricinus communis]
17 Hb_001113_030 0.2350746337 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
18 Hb_001268_120 0.2386880682 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000672_150 0.2406935949 - - Patatin T5 precursor, putative [Ricinus communis]
20 Hb_009545_020 0.2409565834 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]

Gene co-expression network

sample Hb_000671_160 Hb_000671_160 Hb_000671_170 Hb_000671_170 Hb_000671_160--Hb_000671_170 Hb_000868_100 Hb_000868_100 Hb_000671_160--Hb_000868_100 Hb_002284_190 Hb_002284_190 Hb_000671_160--Hb_002284_190 Hb_000694_060 Hb_000694_060 Hb_000671_160--Hb_000694_060 Hb_002660_060 Hb_002660_060 Hb_000671_160--Hb_002660_060 Hb_002805_020 Hb_002805_020 Hb_000671_160--Hb_002805_020 Hb_000671_170--Hb_000868_100 Hb_000672_150 Hb_000672_150 Hb_000671_170--Hb_000672_150 Hb_001959_120 Hb_001959_120 Hb_000671_170--Hb_001959_120 Hb_001113_030 Hb_001113_030 Hb_000671_170--Hb_001113_030 Hb_008173_030 Hb_008173_030 Hb_000671_170--Hb_008173_030 Hb_000868_100--Hb_000694_060 Hb_000868_100--Hb_008173_030 Hb_004460_050 Hb_004460_050 Hb_000868_100--Hb_004460_050 Hb_000049_240 Hb_000049_240 Hb_000868_100--Hb_000049_240 Hb_001776_190 Hb_001776_190 Hb_002284_190--Hb_001776_190 Hb_008759_020 Hb_008759_020 Hb_002284_190--Hb_008759_020 Hb_007153_040 Hb_007153_040 Hb_002284_190--Hb_007153_040 Hb_006538_190 Hb_006538_190 Hb_002284_190--Hb_006538_190 Hb_002284_190--Hb_000694_060 Hb_002374_380 Hb_002374_380 Hb_000694_060--Hb_002374_380 Hb_007017_010 Hb_007017_010 Hb_000694_060--Hb_007017_010 Hb_008948_120 Hb_008948_120 Hb_000694_060--Hb_008948_120 Hb_000948_080 Hb_000948_080 Hb_000694_060--Hb_000948_080 Hb_002236_050 Hb_002236_050 Hb_000694_060--Hb_002236_050 Hb_002660_060--Hb_002805_020 Hb_002660_060--Hb_000671_170 Hb_002486_010 Hb_002486_010 Hb_002660_060--Hb_002486_010 Hb_000676_270 Hb_000676_270 Hb_002660_060--Hb_000676_270 Hb_000554_030 Hb_000554_030 Hb_002660_060--Hb_000554_030 Hb_002805_020--Hb_002486_010 Hb_007747_180 Hb_007747_180 Hb_002805_020--Hb_007747_180 Hb_013766_010 Hb_013766_010 Hb_002805_020--Hb_013766_010 Hb_000297_020 Hb_000297_020 Hb_002805_020--Hb_000297_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.562119 6.3456 1.39538 3.57586 0.202149 0.124626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.50359 7.09922 4.22407 5.87372 1.18389

CAGE analysis