Hb_002284_190

Information

Type -
Description -
Location Contig2284: 136239-141561
Sequence    

Annotation

kegg
ID rcu:RCOM_1601690
description glutamate receptor 3 plant, putative
nr
ID XP_012073614.1
description PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
swissprot
ID Q9C8E7
description Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1
trembl
ID A0A067KKZ1
description Glutamate receptor OS=Jatropha curcas GN=JCGZ_08058 PE=3 SV=1
Gene Ontology
ID GO:0005622
description glutamate receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23809: 136283-139579 , PASA_asmbl_23810: 140126-141280
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_190 0.0 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
2 Hb_001776_190 0.1575503291 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
3 Hb_008759_020 0.1834565244 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
4 Hb_000671_160 0.1912017231 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
5 Hb_007153_040 0.212441685 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
6 Hb_006538_190 0.2157002352 - - PREDICTED: homocysteine S-methyltransferase 1 isoform X1 [Jatropha curcas]
7 Hb_000694_060 0.2253572621 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
8 Hb_017170_030 0.2268507361 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
9 Hb_029921_030 0.2330181535 - - conserved hypothetical protein [Ricinus communis]
10 Hb_031527_060 0.2361008091 - - glutamate decarboxylase, putative [Ricinus communis]
11 Hb_009545_020 0.2423796759 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
12 Hb_011633_040 0.2445630084 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
13 Hb_003592_030 0.2465782361 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
14 Hb_002774_110 0.2469117972 - - heat shock protein binding protein, putative [Ricinus communis]
15 Hb_002660_120 0.2488887462 - - PREDICTED: putative serine/threonine-protein kinase [Populus euphratica]
16 Hb_002805_020 0.25014008 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
17 Hb_000300_130 0.2534463669 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
18 Hb_001789_140 0.2552095194 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Citrus sinensis]
19 Hb_000671_170 0.256009512 - - kinase, putative [Ricinus communis]
20 Hb_000868_100 0.2566178953 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]

Gene co-expression network

sample Hb_002284_190 Hb_002284_190 Hb_001776_190 Hb_001776_190 Hb_002284_190--Hb_001776_190 Hb_008759_020 Hb_008759_020 Hb_002284_190--Hb_008759_020 Hb_000671_160 Hb_000671_160 Hb_002284_190--Hb_000671_160 Hb_007153_040 Hb_007153_040 Hb_002284_190--Hb_007153_040 Hb_006538_190 Hb_006538_190 Hb_002284_190--Hb_006538_190 Hb_000694_060 Hb_000694_060 Hb_002284_190--Hb_000694_060 Hb_029921_030 Hb_029921_030 Hb_001776_190--Hb_029921_030 Hb_001776_190--Hb_008759_020 Hb_029904_010 Hb_029904_010 Hb_001776_190--Hb_029904_010 Hb_000116_590 Hb_000116_590 Hb_001776_190--Hb_000116_590 Hb_011633_040 Hb_011633_040 Hb_001776_190--Hb_011633_040 Hb_002660_120 Hb_002660_120 Hb_008759_020--Hb_002660_120 Hb_008759_020--Hb_000694_060 Hb_003687_220 Hb_003687_220 Hb_008759_020--Hb_003687_220 Hb_003120_040 Hb_003120_040 Hb_008759_020--Hb_003120_040 Hb_000671_170 Hb_000671_170 Hb_000671_160--Hb_000671_170 Hb_000868_100 Hb_000868_100 Hb_000671_160--Hb_000868_100 Hb_000671_160--Hb_000694_060 Hb_002660_060 Hb_002660_060 Hb_000671_160--Hb_002660_060 Hb_002805_020 Hb_002805_020 Hb_000671_160--Hb_002805_020 Hb_004064_010 Hb_004064_010 Hb_007153_040--Hb_004064_010 Hb_000297_020 Hb_000297_020 Hb_007153_040--Hb_000297_020 Hb_105602_010 Hb_105602_010 Hb_007153_040--Hb_105602_010 Hb_017170_030 Hb_017170_030 Hb_007153_040--Hb_017170_030 Hb_000320_300 Hb_000320_300 Hb_007153_040--Hb_000320_300 Hb_003266_100 Hb_003266_100 Hb_007153_040--Hb_003266_100 Hb_006538_190--Hb_017170_030 Hb_000614_170 Hb_000614_170 Hb_006538_190--Hb_000614_170 Hb_162275_020 Hb_162275_020 Hb_006538_190--Hb_162275_020 Hb_001699_200 Hb_001699_200 Hb_006538_190--Hb_001699_200 Hb_006538_190--Hb_007153_040 Hb_000317_420 Hb_000317_420 Hb_006538_190--Hb_000317_420 Hb_002374_380 Hb_002374_380 Hb_000694_060--Hb_002374_380 Hb_000694_060--Hb_000868_100 Hb_007017_010 Hb_007017_010 Hb_000694_060--Hb_007017_010 Hb_008948_120 Hb_008948_120 Hb_000694_060--Hb_008948_120 Hb_000948_080 Hb_000948_080 Hb_000694_060--Hb_000948_080 Hb_002236_050 Hb_002236_050 Hb_000694_060--Hb_002236_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0603004 3.50326 1.69612 2.80043 0.153078 0.00480983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.274679 7.99785 2.65595 9.75062 1.74415

CAGE analysis