Hb_001699_200

Information

Type -
Description -
Location Contig1699: 219874-220320
Sequence    

Annotation

kegg
ID rcu:RCOM_0870400
description Chaperone protein dnaJ 11, chloroplast precursor, putative
nr
ID XP_012065946.1
description PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
swissprot
ID Q9FYB5
description Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2
trembl
ID A0A067LEG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06545 PE=4 SV=1
Gene Ontology
ID GO:0009744
description chaperone protein dnaj chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15801: 219599-220348
cDNA
(Sanger)
(ID:Location)		 005_J22.ab1: 219612-220337 , 017_D23.ab1: 219672-220348

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001699_200 0.0 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
2 Hb_000011_290 0.1402527893 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
3 Hb_000614_170 0.1405583361 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
4 Hb_000320_300 0.1519933782 - - prephenate dehydratase, putative [Ricinus communis]
5 Hb_100147_010 0.1566613499 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
6 Hb_005873_010 0.1596456151 - - cysteine desulfurylase, putative [Ricinus communis]
7 Hb_001971_060 0.1625790595 - - PREDICTED: 66 kDa stress protein-like [Populus euphratica]
8 Hb_001332_040 0.1671780322 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
9 Hb_029385_010 0.1802929162 - - CTP synthase family protein [Populus trichocarpa]
10 Hb_000684_520 0.1832140334 - - glutathione S-transferase L3-like [Jatropha curcas]
11 Hb_000286_060 0.1842100367 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
12 Hb_006538_190 0.1875473934 - - PREDICTED: homocysteine S-methyltransferase 1 isoform X1 [Jatropha curcas]
13 Hb_002539_020 0.1908328207 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
14 Hb_001623_160 0.1947663965 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
15 Hb_000120_720 0.1960324993 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
16 Hb_004079_080 0.2011135637 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
17 Hb_017170_030 0.2021467232 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
18 Hb_004429_090 0.2044131053 - - PREDICTED: ras GTPase-activating protein-binding protein 1-like isoform X1 [Jatropha curcas]
19 Hb_138710_010 0.2046146144 - - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Gossypium arboreum]
20 Hb_000879_190 0.2076030252 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001699_200 Hb_001699_200 Hb_000011_290 Hb_000011_290 Hb_001699_200--Hb_000011_290 Hb_000614_170 Hb_000614_170 Hb_001699_200--Hb_000614_170 Hb_000320_300 Hb_000320_300 Hb_001699_200--Hb_000320_300 Hb_100147_010 Hb_100147_010 Hb_001699_200--Hb_100147_010 Hb_005873_010 Hb_005873_010 Hb_001699_200--Hb_005873_010 Hb_001971_060 Hb_001971_060 Hb_001699_200--Hb_001971_060 Hb_007943_160 Hb_007943_160 Hb_000011_290--Hb_007943_160 Hb_004079_080 Hb_004079_080 Hb_000011_290--Hb_004079_080 Hb_000011_290--Hb_001971_060 Hb_000061_090 Hb_000061_090 Hb_000011_290--Hb_000061_090 Hb_002539_020 Hb_002539_020 Hb_000011_290--Hb_002539_020 Hb_001332_040 Hb_001332_040 Hb_000614_170--Hb_001332_040 Hb_002217_230 Hb_002217_230 Hb_000614_170--Hb_002217_230 Hb_017170_030 Hb_017170_030 Hb_000614_170--Hb_017170_030 Hb_028487_170 Hb_028487_170 Hb_000614_170--Hb_028487_170 Hb_029385_010 Hb_029385_010 Hb_000614_170--Hb_029385_010 Hb_000120_720 Hb_000120_720 Hb_000320_300--Hb_000120_720 Hb_001946_220 Hb_001946_220 Hb_000320_300--Hb_001946_220 Hb_000320_300--Hb_000614_170 Hb_004005_020 Hb_004005_020 Hb_000320_300--Hb_004005_020 Hb_003266_100 Hb_003266_100 Hb_000320_300--Hb_003266_100 Hb_000251_030 Hb_000251_030 Hb_100147_010--Hb_000251_030 Hb_000381_110 Hb_000381_110 Hb_100147_010--Hb_000381_110 Hb_100147_010--Hb_029385_010 Hb_100147_010--Hb_001971_060 Hb_001510_020 Hb_001510_020 Hb_100147_010--Hb_001510_020 Hb_001623_160 Hb_001623_160 Hb_100147_010--Hb_001623_160 Hb_005873_010--Hb_001332_040 Hb_105602_010 Hb_105602_010 Hb_005873_010--Hb_105602_010 Hb_005873_010--Hb_000614_170 Hb_000621_020 Hb_000621_020 Hb_005873_010--Hb_000621_020 Hb_005873_010--Hb_001623_160 Hb_001971_060--Hb_000381_110 Hb_001971_060--Hb_001623_160 Hb_001971_060--Hb_029385_010 Hb_001971_060--Hb_004079_080 Hb_001728_140 Hb_001728_140 Hb_001971_060--Hb_001728_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.6885 4.058 22.1835 31.6567 4.12059 3.61775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.0732 23.0914 30.1254 87.2073 13.4543

CAGE analysis