Hb_005873_010

Information

Type -
Description -
Location Contig5873: 32973-36158
Sequence    

Annotation

kegg
ID rcu:RCOM_1461070
description cysteine desulfurylase, putative (EC:2.8.1.7)
nr
ID XP_002517249.1
description cysteine desulfurylase, putative [Ricinus communis]
swissprot
ID P99177
description Probable cysteine desulfurase OS=Staphylococcus aureus (strain N315) GN=csd PE=1 SV=1
trembl
ID B9RU30
description Cysteine desulfurylase, putative OS=Ricinus communis GN=RCOM_1461070 PE=3 SV=1
Gene Ontology
ID GO:0003824
description chloroplastic nifs-like cysteine desulfurase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005873_010 0.0 - - cysteine desulfurylase, putative [Ricinus communis]
2 Hb_001332_040 0.1529787585 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
3 Hb_001699_200 0.1596456151 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
4 Hb_105602_010 0.1681391919 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
5 Hb_000614_170 0.1691991518 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
6 Hb_000621_020 0.1709694699 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
7 Hb_001623_160 0.1729292666 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
8 Hb_005285_030 0.1761247822 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
9 Hb_000015_030 0.1764149134 - - PREDICTED: THO complex subunit 4B-like [Jatropha curcas]
10 Hb_003038_140 0.1797661957 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
11 Hb_094437_060 0.1811183521 - - PREDICTED: cytochrome B5 isoform D-like [Jatropha curcas]
12 Hb_007432_020 0.1815927035 - - hypothetical protein POPTR_0010s13310g [Populus trichocarpa]
13 Hb_000184_230 0.1839245987 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Jatropha curcas]
14 Hb_000320_300 0.1853412376 - - prephenate dehydratase, putative [Ricinus communis]
15 Hb_004064_010 0.1877376769 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
16 Hb_003266_100 0.1916591615 - - Isomerase protein [Gossypium arboreum]
17 Hb_150360_020 0.194697615 - - PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
18 Hb_002236_040 0.1953376037 - - PREDICTED: cytochrome c [Jatropha curcas]
19 Hb_001486_030 0.1969532723 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000031_260 0.1990304548 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]

Gene co-expression network

sample Hb_005873_010 Hb_005873_010 Hb_001332_040 Hb_001332_040 Hb_005873_010--Hb_001332_040 Hb_001699_200 Hb_001699_200 Hb_005873_010--Hb_001699_200 Hb_105602_010 Hb_105602_010 Hb_005873_010--Hb_105602_010 Hb_000614_170 Hb_000614_170 Hb_005873_010--Hb_000614_170 Hb_000621_020 Hb_000621_020 Hb_005873_010--Hb_000621_020 Hb_001623_160 Hb_001623_160 Hb_005873_010--Hb_001623_160 Hb_000286_060 Hb_000286_060 Hb_001332_040--Hb_000286_060 Hb_003266_100 Hb_003266_100 Hb_001332_040--Hb_003266_100 Hb_016522_010 Hb_016522_010 Hb_001332_040--Hb_016522_010 Hb_000103_270 Hb_000103_270 Hb_001332_040--Hb_000103_270 Hb_001332_040--Hb_000621_020 Hb_004429_090 Hb_004429_090 Hb_001332_040--Hb_004429_090 Hb_000011_290 Hb_000011_290 Hb_001699_200--Hb_000011_290 Hb_001699_200--Hb_000614_170 Hb_000320_300 Hb_000320_300 Hb_001699_200--Hb_000320_300 Hb_100147_010 Hb_100147_010 Hb_001699_200--Hb_100147_010 Hb_001971_060 Hb_001971_060 Hb_001699_200--Hb_001971_060 Hb_009687_010 Hb_009687_010 Hb_105602_010--Hb_009687_010 Hb_004064_010 Hb_004064_010 Hb_105602_010--Hb_004064_010 Hb_105602_010--Hb_000621_020 Hb_105602_010--Hb_003266_100 Hb_105602_010--Hb_001332_040 Hb_105602_010--Hb_000103_270 Hb_000614_170--Hb_001332_040 Hb_002217_230 Hb_002217_230 Hb_000614_170--Hb_002217_230 Hb_017170_030 Hb_017170_030 Hb_000614_170--Hb_017170_030 Hb_028487_170 Hb_028487_170 Hb_000614_170--Hb_028487_170 Hb_029385_010 Hb_029385_010 Hb_000614_170--Hb_029385_010 Hb_000621_020--Hb_003266_100 Hb_000621_020--Hb_004064_010 Hb_109002_020 Hb_109002_020 Hb_000621_020--Hb_109002_020 Hb_004079_080 Hb_004079_080 Hb_000621_020--Hb_004079_080 Hb_000621_020--Hb_000103_270 Hb_001214_090 Hb_001214_090 Hb_001623_160--Hb_001214_090 Hb_000381_110 Hb_000381_110 Hb_001623_160--Hb_000381_110 Hb_003038_140 Hb_003038_140 Hb_001623_160--Hb_003038_140 Hb_001623_160--Hb_001971_060 Hb_001623_160--Hb_004079_080 Hb_001623_160--Hb_001332_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.340014 0.870167 1.46076 1.98014 0.148385 0.864735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.89858 2.17624 2.08092 5.83108 0.294501

CAGE analysis