Hb_000320_300

Information

Type -
Description -
Location Contig320: 220865-229200
Sequence    

Annotation

kegg
ID rcu:RCOM_0904290
description prephenate dehydratase, putative (EC:4.2.1.51)
nr
ID XP_002518471.1
description prephenate dehydratase, putative [Ricinus communis]
swissprot
ID Q9SA96
description Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1
trembl
ID B9RXK2
description Prephenate dehydratase, putative OS=Ricinus communis GN=RCOM_0904290 PE=4 SV=1
Gene Ontology
ID GO:0004664
description arogenate dehydratase prephenate dehydratase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33808: 220887-222017 , PASA_asmbl_33810: 226632-227157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_300 0.0 - - prephenate dehydratase, putative [Ricinus communis]
2 Hb_000120_720 0.0964497408 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
3 Hb_001946_220 0.1386346369 - - PREDICTED: signal peptidase complex catalytic subunit SEC11A-like [Jatropha curcas]
4 Hb_001699_200 0.1519933782 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
5 Hb_000614_170 0.1616014083 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
6 Hb_004005_020 0.1629040968 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
7 Hb_003266_100 0.1717033438 - - Isomerase protein [Gossypium arboreum]
8 Hb_001140_360 0.1743660284 - - -
9 Hb_007153_040 0.1771765869 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
10 Hb_029385_010 0.1779149258 - - CTP synthase family protein [Populus trichocarpa]
11 Hb_004064_010 0.178036639 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
12 Hb_001971_060 0.179511616 - - PREDICTED: 66 kDa stress protein-like [Populus euphratica]
13 Hb_003207_010 0.1812137289 - - PREDICTED: phospholipase D beta 1-like [Jatropha curcas]
14 Hb_011282_050 0.1817290932 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
15 Hb_000684_520 0.1820632339 - - glutathione S-transferase L3-like [Jatropha curcas]
16 Hb_168893_020 0.1834653665 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
17 Hb_005873_010 0.1853412376 - - cysteine desulfurylase, putative [Ricinus communis]
18 Hb_000270_180 0.1867579309 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
19 Hb_001332_040 0.1869448499 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
20 Hb_000368_030 0.1882093001 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000320_300 Hb_000320_300 Hb_000120_720 Hb_000120_720 Hb_000320_300--Hb_000120_720 Hb_001946_220 Hb_001946_220 Hb_000320_300--Hb_001946_220 Hb_001699_200 Hb_001699_200 Hb_000320_300--Hb_001699_200 Hb_000614_170 Hb_000614_170 Hb_000320_300--Hb_000614_170 Hb_004005_020 Hb_004005_020 Hb_000320_300--Hb_004005_020 Hb_003266_100 Hb_003266_100 Hb_000320_300--Hb_003266_100 Hb_000120_720--Hb_001946_220 Hb_172112_020 Hb_172112_020 Hb_000120_720--Hb_172112_020 Hb_000120_720--Hb_003266_100 Hb_007185_040 Hb_007185_040 Hb_000120_720--Hb_007185_040 Hb_001369_300 Hb_001369_300 Hb_000120_720--Hb_001369_300 Hb_000742_010 Hb_000742_010 Hb_001946_220--Hb_000742_010 Hb_002913_010 Hb_002913_010 Hb_001946_220--Hb_002913_010 Hb_007919_020 Hb_007919_020 Hb_001946_220--Hb_007919_020 Hb_001205_080 Hb_001205_080 Hb_001946_220--Hb_001205_080 Hb_000011_290 Hb_000011_290 Hb_001699_200--Hb_000011_290 Hb_001699_200--Hb_000614_170 Hb_100147_010 Hb_100147_010 Hb_001699_200--Hb_100147_010 Hb_005873_010 Hb_005873_010 Hb_001699_200--Hb_005873_010 Hb_001971_060 Hb_001971_060 Hb_001699_200--Hb_001971_060 Hb_001332_040 Hb_001332_040 Hb_000614_170--Hb_001332_040 Hb_002217_230 Hb_002217_230 Hb_000614_170--Hb_002217_230 Hb_017170_030 Hb_017170_030 Hb_000614_170--Hb_017170_030 Hb_028487_170 Hb_028487_170 Hb_000614_170--Hb_028487_170 Hb_029385_010 Hb_029385_010 Hb_000614_170--Hb_029385_010 Hb_006538_090 Hb_006538_090 Hb_004005_020--Hb_006538_090 Hb_000723_230 Hb_000723_230 Hb_004005_020--Hb_000723_230 Hb_006637_030 Hb_006637_030 Hb_004005_020--Hb_006637_030 Hb_168893_020 Hb_168893_020 Hb_004005_020--Hb_168893_020 Hb_001016_100 Hb_001016_100 Hb_004005_020--Hb_001016_100 Hb_000853_150 Hb_000853_150 Hb_004005_020--Hb_000853_150 Hb_004064_010 Hb_004064_010 Hb_003266_100--Hb_004064_010 Hb_000621_020 Hb_000621_020 Hb_003266_100--Hb_000621_020 Hb_016522_010 Hb_016522_010 Hb_003266_100--Hb_016522_010 Hb_000483_260 Hb_000483_260 Hb_003266_100--Hb_000483_260 Hb_109002_020 Hb_109002_020 Hb_003266_100--Hb_109002_020 Hb_000665_050 Hb_000665_050 Hb_003266_100--Hb_000665_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.494597 1.03395 4.38953 2.3058 0.665172 0.532961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.13494 3.22667 2.62187 7.49968 1.19712

CAGE analysis