Hb_000120_720

Information

Type transcription factor
Description TF Family: HB
Location Contig120: 570420-573470
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10480g
description POPTRDRAFT_650992; homeobox-leucine zipper family protein
nr
ID XP_002306432.1
description homeobox-leucine zipper family protein [Populus trichocarpa]
swissprot
ID O81788
description WUSCHEL-related homeobox 13 OS=Arabidopsis thaliana GN=WOX13 PE=2 SV=1
trembl
ID B9H676
description Homeobox-leucine zipper family protein OS=Populus trichocarpa GN=POPTR_0005s10480g PE=4 SV=1
Gene Ontology
ID GO:0005634
description wuschel-related homeobox 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06188: 570422-573306 , PASA_asmbl_06189: 573311-573522
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_720 0.0 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
2 Hb_000320_300 0.0964497408 - - prephenate dehydratase, putative [Ricinus communis]
3 Hb_001946_220 0.136241564 - - PREDICTED: signal peptidase complex catalytic subunit SEC11A-like [Jatropha curcas]
4 Hb_172112_020 0.1439830016 - - PREDICTED: fumarylacetoacetase [Jatropha curcas]
5 Hb_003266_100 0.1742439214 - - Isomerase protein [Gossypium arboreum]
6 Hb_007185_040 0.1756303479 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
7 Hb_001369_300 0.1801909369 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
8 Hb_000015_030 0.1810508738 - - PREDICTED: THO complex subunit 4B-like [Jatropha curcas]
9 Hb_007545_120 0.1812866977 - - NADH:cytochrome b5 reductase [Vernicia fordii]
10 Hb_011282_050 0.1819287261 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
11 Hb_004005_020 0.1819700615 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
12 Hb_004064_010 0.1832805511 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
13 Hb_001140_360 0.1846384838 - - -
14 Hb_138710_010 0.1848451616 - - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Gossypium arboreum]
15 Hb_000002_310 0.1851466888 - - PREDICTED: uncharacterized protein LOC105632109 [Jatropha curcas]
16 Hb_001332_040 0.1853118806 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
17 Hb_002235_050 0.1876022598 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
18 Hb_008226_070 0.1888310228 - - PREDICTED: expansin-A8 [Jatropha curcas]
19 Hb_168893_020 0.1918166391 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
20 Hb_000190_090 0.1938444757 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_720 Hb_000120_720 Hb_000320_300 Hb_000320_300 Hb_000120_720--Hb_000320_300 Hb_001946_220 Hb_001946_220 Hb_000120_720--Hb_001946_220 Hb_172112_020 Hb_172112_020 Hb_000120_720--Hb_172112_020 Hb_003266_100 Hb_003266_100 Hb_000120_720--Hb_003266_100 Hb_007185_040 Hb_007185_040 Hb_000120_720--Hb_007185_040 Hb_001369_300 Hb_001369_300 Hb_000120_720--Hb_001369_300 Hb_000320_300--Hb_001946_220 Hb_001699_200 Hb_001699_200 Hb_000320_300--Hb_001699_200 Hb_000614_170 Hb_000614_170 Hb_000320_300--Hb_000614_170 Hb_004005_020 Hb_004005_020 Hb_000320_300--Hb_004005_020 Hb_000320_300--Hb_003266_100 Hb_000742_010 Hb_000742_010 Hb_001946_220--Hb_000742_010 Hb_002913_010 Hb_002913_010 Hb_001946_220--Hb_002913_010 Hb_007919_020 Hb_007919_020 Hb_001946_220--Hb_007919_020 Hb_001205_080 Hb_001205_080 Hb_001946_220--Hb_001205_080 Hb_172112_020--Hb_007185_040 Hb_010422_010 Hb_010422_010 Hb_172112_020--Hb_010422_010 Hb_000979_220 Hb_000979_220 Hb_172112_020--Hb_000979_220 Hb_011282_050 Hb_011282_050 Hb_172112_020--Hb_011282_050 Hb_000190_090 Hb_000190_090 Hb_172112_020--Hb_000190_090 Hb_172112_020--Hb_001369_300 Hb_004064_010 Hb_004064_010 Hb_003266_100--Hb_004064_010 Hb_000621_020 Hb_000621_020 Hb_003266_100--Hb_000621_020 Hb_016522_010 Hb_016522_010 Hb_003266_100--Hb_016522_010 Hb_000483_260 Hb_000483_260 Hb_003266_100--Hb_000483_260 Hb_109002_020 Hb_109002_020 Hb_003266_100--Hb_109002_020 Hb_000665_050 Hb_000665_050 Hb_003266_100--Hb_000665_050 Hb_001004_140 Hb_001004_140 Hb_007185_040--Hb_001004_140 Hb_002596_060 Hb_002596_060 Hb_007185_040--Hb_002596_060 Hb_010872_050 Hb_010872_050 Hb_007185_040--Hb_010872_050 Hb_016734_020 Hb_016734_020 Hb_007185_040--Hb_016734_020 Hb_107298_010 Hb_107298_010 Hb_007185_040--Hb_107298_010 Hb_001660_100 Hb_001660_100 Hb_001369_300--Hb_001660_100 Hb_001357_310 Hb_001357_310 Hb_001369_300--Hb_001357_310 Hb_000510_340 Hb_000510_340 Hb_001369_300--Hb_000510_340 Hb_000402_150 Hb_000402_150 Hb_001369_300--Hb_000402_150 Hb_005271_040 Hb_005271_040 Hb_001369_300--Hb_005271_040 Hb_000875_080 Hb_000875_080 Hb_001369_300--Hb_000875_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.62121 2.52132 12.5791 5.72362 3.1054 2.12079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.30058 8.94841 5.48798 23.3855 3.18536

CAGE analysis