Hb_000614_170

Information

Type -
Description -
Location Contig614: 100607-103296
Sequence    

Annotation

kegg
ID cic:CICLE_v10032014mg
description hypothetical protein
nr
ID KHG15503.1
description Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
swissprot
ID P04796
description Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2
trembl
ID A0A0B0NLT1
description Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic OS=Gossypium arboreum GN=F383_01196 PE=3 SV=1
Gene Ontology
ID GO:0005618
description glyceraldehyde-3-phosphate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51133: 100635-103296
cDNA
(Sanger)
(ID:Location)		 006_G01.ab1: 101534-103296 , 009_I16.ab1: 101482-103245 , 035_K15.ab1: 101567-103296 , 040_E15.ab1: 101534-103296

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000614_170 0.0 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
2 Hb_001699_200 0.1405583361 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
3 Hb_001332_040 0.1478216236 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
4 Hb_002217_230 0.1553951323 - - PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
5 Hb_017170_030 0.1554213859 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
6 Hb_028487_170 0.1576057087 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
7 Hb_029385_010 0.1593687398 - - CTP synthase family protein [Populus trichocarpa]
8 Hb_001971_060 0.1595155151 - - PREDICTED: 66 kDa stress protein-like [Populus euphratica]
9 Hb_000320_300 0.1616014083 - - prephenate dehydratase, putative [Ricinus communis]
10 Hb_000286_060 0.1623494006 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
11 Hb_006538_190 0.1628925306 - - PREDICTED: homocysteine S-methyltransferase 1 isoform X1 [Jatropha curcas]
12 Hb_005873_010 0.1691991518 - - cysteine desulfurylase, putative [Ricinus communis]
13 Hb_105602_010 0.1695577849 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
14 Hb_001638_230 0.1697850008 - - RNA-binding region-containing protein, putative [Ricinus communis]
15 Hb_002783_110 0.1703566863 - - Zeamatin precursor, putative [Ricinus communis]
16 Hb_005285_030 0.1705407124 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
17 Hb_000184_230 0.1720563699 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Jatropha curcas]
18 Hb_000297_020 0.1729607175 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
19 Hb_130719_010 0.1739970804 - - V-type proton ATPase subunit E [Hevea brasiliensis]
20 Hb_100147_010 0.1757424542 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]

Gene co-expression network

sample Hb_000614_170 Hb_000614_170 Hb_001699_200 Hb_001699_200 Hb_000614_170--Hb_001699_200 Hb_001332_040 Hb_001332_040 Hb_000614_170--Hb_001332_040 Hb_002217_230 Hb_002217_230 Hb_000614_170--Hb_002217_230 Hb_017170_030 Hb_017170_030 Hb_000614_170--Hb_017170_030 Hb_028487_170 Hb_028487_170 Hb_000614_170--Hb_028487_170 Hb_029385_010 Hb_029385_010 Hb_000614_170--Hb_029385_010 Hb_000011_290 Hb_000011_290 Hb_001699_200--Hb_000011_290 Hb_000320_300 Hb_000320_300 Hb_001699_200--Hb_000320_300 Hb_100147_010 Hb_100147_010 Hb_001699_200--Hb_100147_010 Hb_005873_010 Hb_005873_010 Hb_001699_200--Hb_005873_010 Hb_001971_060 Hb_001971_060 Hb_001699_200--Hb_001971_060 Hb_000286_060 Hb_000286_060 Hb_001332_040--Hb_000286_060 Hb_003266_100 Hb_003266_100 Hb_001332_040--Hb_003266_100 Hb_016522_010 Hb_016522_010 Hb_001332_040--Hb_016522_010 Hb_000103_270 Hb_000103_270 Hb_001332_040--Hb_000103_270 Hb_000621_020 Hb_000621_020 Hb_001332_040--Hb_000621_020 Hb_004429_090 Hb_004429_090 Hb_001332_040--Hb_004429_090 Hb_032208_060 Hb_032208_060 Hb_002217_230--Hb_032208_060 Hb_004672_010 Hb_004672_010 Hb_002217_230--Hb_004672_010 Hb_001638_230 Hb_001638_230 Hb_002217_230--Hb_001638_230 Hb_000896_040 Hb_000896_040 Hb_002217_230--Hb_000896_040 Hb_004931_100 Hb_004931_100 Hb_002217_230--Hb_004931_100 Hb_005285_030 Hb_005285_030 Hb_002217_230--Hb_005285_030 Hb_006538_190 Hb_006538_190 Hb_017170_030--Hb_006538_190 Hb_000297_020 Hb_000297_020 Hb_017170_030--Hb_000297_020 Hb_162275_020 Hb_162275_020 Hb_017170_030--Hb_162275_020 Hb_000723_170 Hb_000723_170 Hb_017170_030--Hb_000723_170 Hb_007153_040 Hb_007153_040 Hb_017170_030--Hb_007153_040 Hb_028487_170--Hb_005285_030 Hb_028487_170--Hb_000286_060 Hb_000300_430 Hb_000300_430 Hb_028487_170--Hb_000300_430 Hb_001123_160 Hb_001123_160 Hb_028487_170--Hb_001123_160 Hb_000700_040 Hb_000700_040 Hb_028487_170--Hb_000700_040 Hb_004453_080 Hb_004453_080 Hb_028487_170--Hb_004453_080 Hb_029385_010--Hb_100147_010 Hb_001728_140 Hb_001728_140 Hb_029385_010--Hb_001728_140 Hb_001510_020 Hb_001510_020 Hb_029385_010--Hb_001510_020 Hb_000251_030 Hb_000251_030 Hb_029385_010--Hb_000251_030 Hb_029385_010--Hb_001971_060 Hb_000381_110 Hb_000381_110 Hb_029385_010--Hb_000381_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.7369 41.3892 137.729 178.776 20.0224 20.9255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
183.317 263.119 271.051 396.534 76.0792

CAGE analysis