Hb_162275_020

Information

Type -
Description -
Location Contig162275: 12478-15835
Sequence    

Annotation

kegg
ID rcu:RCOM_0084940
description Sialin, putative
nr
ID AJH76873.1
description phosphate transporter [Manihot esculenta]
swissprot
ID Q7XJR2
description Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2
trembl
ID A0A0B5WYW1
description PT4;3 protein OS=Manihot esculenta GN=PT4;3 PE=2 SV=1
Gene Ontology
ID GO:0016021
description probable anion transporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14659: 12480-12947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162275_020 0.0 - - phosphate transporter [Manihot esculenta]
2 Hb_017170_030 0.1529550749 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
3 Hb_000297_020 0.1652940385 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
4 Hb_006538_190 0.1753155494 - - PREDICTED: homocysteine S-methyltransferase 1 isoform X1 [Jatropha curcas]
5 Hb_000614_170 0.1776102851 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
6 Hb_000732_210 0.1783497057 - - hexose transporter 1 [Hevea brasiliensis]
7 Hb_000005_400 0.1897077958 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
8 Hb_004931_100 0.192737452 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]
9 Hb_004208_130 0.2029367618 - - hypothetical protein JCGZ_16532 [Jatropha curcas]
10 Hb_007553_010 0.2144594571 - - -
11 Hb_002217_230 0.2187492145 - - PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
12 Hb_000685_050 0.2224763725 - - PREDICTED: mitochondrial inner membrane protein OXA1-like [Populus euphratica]
13 Hb_130719_010 0.2300363997 - - V-type proton ATPase subunit E [Hevea brasiliensis]
14 Hb_007432_020 0.2314818977 - - hypothetical protein POPTR_0010s13310g [Populus trichocarpa]
15 Hb_001332_040 0.2314876554 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
16 Hb_138585_040 0.2321872584 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
17 Hb_138710_010 0.2324264665 - - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Gossypium arboreum]
18 Hb_001699_200 0.2327783062 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
19 Hb_000345_250 0.2328764743 - - cullin 1-like protein [Hevea brasiliensis]
20 Hb_008725_040 0.2329517171 - - PREDICTED: uncharacterized protein At4g29660 [Nelumbo nucifera]

Gene co-expression network

sample Hb_162275_020 Hb_162275_020 Hb_017170_030 Hb_017170_030 Hb_162275_020--Hb_017170_030 Hb_000297_020 Hb_000297_020 Hb_162275_020--Hb_000297_020 Hb_006538_190 Hb_006538_190 Hb_162275_020--Hb_006538_190 Hb_000614_170 Hb_000614_170 Hb_162275_020--Hb_000614_170 Hb_000732_210 Hb_000732_210 Hb_162275_020--Hb_000732_210 Hb_000005_400 Hb_000005_400 Hb_162275_020--Hb_000005_400 Hb_017170_030--Hb_006538_190 Hb_017170_030--Hb_000297_020 Hb_017170_030--Hb_000614_170 Hb_000723_170 Hb_000723_170 Hb_017170_030--Hb_000723_170 Hb_007153_040 Hb_007153_040 Hb_017170_030--Hb_007153_040 Hb_000297_020--Hb_007153_040 Hb_105602_010 Hb_105602_010 Hb_000297_020--Hb_105602_010 Hb_004208_130 Hb_004208_130 Hb_000297_020--Hb_004208_130 Hb_000297_020--Hb_000614_170 Hb_006538_190--Hb_000614_170 Hb_001699_200 Hb_001699_200 Hb_006538_190--Hb_001699_200 Hb_006538_190--Hb_007153_040 Hb_000317_420 Hb_000317_420 Hb_006538_190--Hb_000317_420 Hb_000614_170--Hb_001699_200 Hb_001332_040 Hb_001332_040 Hb_000614_170--Hb_001332_040 Hb_002217_230 Hb_002217_230 Hb_000614_170--Hb_002217_230 Hb_028487_170 Hb_028487_170 Hb_000614_170--Hb_028487_170 Hb_029385_010 Hb_029385_010 Hb_000614_170--Hb_029385_010 Hb_130719_010 Hb_130719_010 Hb_000732_210--Hb_130719_010 Hb_000117_100 Hb_000117_100 Hb_000732_210--Hb_000117_100 Hb_000732_210--Hb_000614_170 Hb_000732_210--Hb_000297_020 Hb_000732_210--Hb_002217_230 Hb_007553_010 Hb_007553_010 Hb_000005_400--Hb_007553_010 Hb_000042_360 Hb_000042_360 Hb_000005_400--Hb_000042_360 Hb_000270_740 Hb_000270_740 Hb_000005_400--Hb_000270_740 Hb_158104_020 Hb_158104_020 Hb_000005_400--Hb_158104_020 Hb_003502_100 Hb_003502_100 Hb_000005_400--Hb_003502_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.12438 1.06637 1.54698 14.7004 0.444009 0.886769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2829 22.5575 13.962 27.2342 3.04644

CAGE analysis