Hb_158104_020

Information

Type -
Description -
Location Contig158104: 4818-6088
Sequence    

Annotation

kegg
ID tcc:TCM_043209
description Cwf18 isoform 1
nr
ID XP_012079595.1
description PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
swissprot
ID Q8R344
description Coiled-coil domain-containing protein 12 OS=Mus musculus GN=Ccdc12 PE=1 SV=2
trembl
ID A0A067LN12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17431 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13925: 4675-5717
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158104_020 0.0 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
2 Hb_000317_420 0.1484418496 - - PREDICTED: extradiol ring-cleavage dioxygenase [Jatropha curcas]
3 Hb_007441_240 0.1514926569 - - ethphon-induced protein [Hevea brasiliensis]
4 Hb_000270_740 0.1715894691 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
5 Hb_000407_070 0.1784125168 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
6 Hb_028049_010 0.1801283594 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
7 Hb_000723_170 0.1805793402 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
8 Hb_004007_110 0.1857974281 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
9 Hb_000771_060 0.1921137694 - - PREDICTED: spermine synthase [Jatropha curcas]
10 Hb_012807_130 0.1923798283 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
11 Hb_001410_060 0.1967668439 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
12 Hb_027073_010 0.1967674301 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
13 Hb_004627_030 0.1970282903 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
14 Hb_028487_170 0.1977223777 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
15 Hb_000382_020 0.1979920717 - - PREDICTED: uncharacterized protein LOC105633610 [Jatropha curcas]
16 Hb_000110_120 0.1983233589 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
17 Hb_000260_280 0.1992050868 - - auxin:hydrogen symporter, putative [Ricinus communis]
18 Hb_012305_130 0.2006204151 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
19 Hb_000428_060 0.2016399478 - - malate dehydrogenase, putative [Ricinus communis]
20 Hb_021409_080 0.2025545671 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_158104_020 Hb_158104_020 Hb_000317_420 Hb_000317_420 Hb_158104_020--Hb_000317_420 Hb_007441_240 Hb_007441_240 Hb_158104_020--Hb_007441_240 Hb_000270_740 Hb_000270_740 Hb_158104_020--Hb_000270_740 Hb_000407_070 Hb_000407_070 Hb_158104_020--Hb_000407_070 Hb_028049_010 Hb_028049_010 Hb_158104_020--Hb_028049_010 Hb_000723_170 Hb_000723_170 Hb_158104_020--Hb_000723_170 Hb_006836_030 Hb_006836_030 Hb_000317_420--Hb_006836_030 Hb_000317_420--Hb_007441_240 Hb_004007_110 Hb_004007_110 Hb_000317_420--Hb_004007_110 Hb_000317_420--Hb_000723_170 Hb_001975_040 Hb_001975_040 Hb_000317_420--Hb_001975_040 Hb_000110_120 Hb_000110_120 Hb_007441_240--Hb_000110_120 Hb_000077_180 Hb_000077_180 Hb_007441_240--Hb_000077_180 Hb_000739_140 Hb_000739_140 Hb_007441_240--Hb_000739_140 Hb_007441_240--Hb_028049_010 Hb_000771_060 Hb_000771_060 Hb_007441_240--Hb_000771_060 Hb_000270_740--Hb_007441_240 Hb_004787_040 Hb_004787_040 Hb_000270_740--Hb_004787_040 Hb_000270_740--Hb_000739_140 Hb_000768_130 Hb_000768_130 Hb_000270_740--Hb_000768_130 Hb_000382_020 Hb_000382_020 Hb_000270_740--Hb_000382_020 Hb_111985_110 Hb_111985_110 Hb_000407_070--Hb_111985_110 Hb_012305_130 Hb_012305_130 Hb_000407_070--Hb_012305_130 Hb_021409_080 Hb_021409_080 Hb_000407_070--Hb_021409_080 Hb_002301_160 Hb_002301_160 Hb_000407_070--Hb_002301_160 Hb_004627_030 Hb_004627_030 Hb_000407_070--Hb_004627_030 Hb_000009_290 Hb_000009_290 Hb_000407_070--Hb_000009_290 Hb_028049_010--Hb_012305_130 Hb_028049_010--Hb_000110_120 Hb_028049_010--Hb_004007_110 Hb_028049_010--Hb_021409_080 Hb_028049_010--Hb_000771_060 Hb_000428_060 Hb_000428_060 Hb_028049_010--Hb_000428_060 Hb_001510_020 Hb_001510_020 Hb_000723_170--Hb_001510_020 Hb_003376_180 Hb_003376_180 Hb_000723_170--Hb_003376_180 Hb_000251_030 Hb_000251_030 Hb_000723_170--Hb_000251_030 Hb_003305_020 Hb_003305_020 Hb_000723_170--Hb_003305_020 Hb_000210_060 Hb_000210_060 Hb_000723_170--Hb_000210_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.50574 12.8444 13.2906 75.3998 2.29982 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.9746 62.2849 22.5381 38.0988 22.2992

CAGE analysis