Hb_001975_040

Information

Type rubber biosynthesis
Description Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
Location Contig1975: 42012-44469
Sequence    

Annotation

kegg
ID rcu:RCOM_0784670
description 4-diphosphocytidyl-2-C-methyl-d-erythritol kinase, putative (EC:2.7.1.148)
nr
ID BAF98293.1
description 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
swissprot
ID P93841
description 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic (Fragment) OS=Solanum lycopersicum GN=ISPE PE=1 SV=1
trembl
ID A9ZN11
description 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase OS=Hevea brasiliensis GN=HbCMK PE=2 SV=1
Gene Ontology
ID GO:0005524
description 4-diphosphocytidyl-2-c-methyl-d-erythritol chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19818: 36290-44216
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001975_040 0.0 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
2 Hb_000317_420 0.1369431177 - - PREDICTED: extradiol ring-cleavage dioxygenase [Jatropha curcas]
3 Hb_006836_030 0.148475551 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
4 Hb_001975_030 0.1508509971 - - 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]
5 Hb_002835_340 0.1582746946 - - PREDICTED: peroxisomal primary amine oxidase [Jatropha curcas]
6 Hb_000012_110 0.1586128182 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
7 Hb_002660_120 0.1645794115 - - PREDICTED: putative serine/threonine-protein kinase [Populus euphratica]
8 Hb_000723_170 0.1652173816 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
9 Hb_007590_090 0.1663196396 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
10 Hb_012807_130 0.1722101187 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
11 Hb_001510_020 0.1735971541 - - Diaminopimelate epimerase, putative [Ricinus communis]
12 Hb_004007_110 0.1762022661 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
13 Hb_000139_340 0.1793884935 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010672_030 0.1849364383 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
15 Hb_005016_010 0.1898969721 - - AMP dependent CoA ligase, putative [Ricinus communis]
16 Hb_180378_010 0.1939432819 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
17 Hb_000210_060 0.1947689564 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
18 Hb_002615_030 0.1959994593 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
19 Hb_011872_020 0.1962551331 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH128 [Jatropha curcas]
20 Hb_027380_190 0.1967098239 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001975_040 Hb_001975_040 Hb_000317_420 Hb_000317_420 Hb_001975_040--Hb_000317_420 Hb_006836_030 Hb_006836_030 Hb_001975_040--Hb_006836_030 Hb_001975_030 Hb_001975_030 Hb_001975_040--Hb_001975_030 Hb_002835_340 Hb_002835_340 Hb_001975_040--Hb_002835_340 Hb_000012_110 Hb_000012_110 Hb_001975_040--Hb_000012_110 Hb_002660_120 Hb_002660_120 Hb_001975_040--Hb_002660_120 Hb_000317_420--Hb_006836_030 Hb_007441_240 Hb_007441_240 Hb_000317_420--Hb_007441_240 Hb_004007_110 Hb_004007_110 Hb_000317_420--Hb_004007_110 Hb_000723_170 Hb_000723_170 Hb_000317_420--Hb_000723_170 Hb_158104_020 Hb_158104_020 Hb_000317_420--Hb_158104_020 Hb_027298_030 Hb_027298_030 Hb_006836_030--Hb_027298_030 Hb_006836_030--Hb_000012_110 Hb_006836_030--Hb_001975_030 Hb_006836_030--Hb_004007_110 Hb_001817_100 Hb_001817_100 Hb_001975_030--Hb_001817_100 Hb_007590_090 Hb_007590_090 Hb_001975_030--Hb_007590_090 Hb_001975_030--Hb_000012_110 Hb_002615_030 Hb_002615_030 Hb_001975_030--Hb_002615_030 Hb_001998_200 Hb_001998_200 Hb_001975_030--Hb_001998_200 Hb_000110_060 Hb_000110_060 Hb_001975_030--Hb_000110_060 Hb_002835_340--Hb_000317_420 Hb_003592_030 Hb_003592_030 Hb_002835_340--Hb_003592_030 Hb_002539_040 Hb_002539_040 Hb_002835_340--Hb_002539_040 Hb_012807_130 Hb_012807_130 Hb_002835_340--Hb_012807_130 Hb_002835_340--Hb_002660_120 Hb_000012_110--Hb_004007_110 Hb_000012_110--Hb_001998_200 Hb_000012_110--Hb_002615_030 Hb_000012_110--Hb_007590_090 Hb_003602_060 Hb_003602_060 Hb_000012_110--Hb_003602_060 Hb_015057_020 Hb_015057_020 Hb_000012_110--Hb_015057_020 Hb_011872_020 Hb_011872_020 Hb_002660_120--Hb_011872_020 Hb_000092_120 Hb_000092_120 Hb_002660_120--Hb_000092_120 Hb_027654_080 Hb_027654_080 Hb_002660_120--Hb_027654_080 Hb_002660_120--Hb_001975_030 Hb_028707_070 Hb_028707_070 Hb_002660_120--Hb_028707_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.177311 3.89779 3.45739 9.20878 0.0417034 0.499845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.03484 9.21077 2.35434 8.94386 9.04076

CAGE analysis