Hb_027298_030

Information

Type -
Description -
Location Contig27298: 20115-21176
Sequence    

Annotation

kegg
ID pop:POPTR_0013s04000g
description hypothetical protein
nr
ID XP_012089285.1
description PREDICTED: histone H1-like [Jatropha curcas]
swissprot
ID P26569
description Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1
trembl
ID A0A067JI99
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23514 PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28516: 19789-21179
cDNA
(Sanger)
(ID:Location)		 038_E23.ab1: 20204-20758

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027298_030 0.0 - - PREDICTED: histone H1-like [Jatropha curcas]
2 Hb_003181_060 0.0967973619 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
3 Hb_021079_010 0.1149244551 - - PREDICTED: histone H2B-like [Populus euphratica]
4 Hb_004317_030 0.130974789 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
5 Hb_000510_080 0.1328041877 - - hypothetical protein CICLE_v10021453mg [Citrus clementina]
6 Hb_006836_030 0.1356569068 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
7 Hb_000723_340 0.1415338338 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
8 Hb_000510_030 0.1424244398 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
9 Hb_000392_550 0.1437347573 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000032_370 0.1494877706 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
11 Hb_000012_110 0.151395476 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
12 Hb_000208_180 0.1563658863 - - PREDICTED: histone H2B-like [Populus euphratica]
13 Hb_000260_620 0.1597714314 - - Thermosensitive gluconokinase, putative [Ricinus communis]
14 Hb_001898_050 0.1637177278 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
15 Hb_000210_060 0.1673506899 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
16 Hb_000388_060 0.1680315859 - - fructokinase [Manihot esculenta]
17 Hb_001322_230 0.1699147447 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
18 Hb_001711_120 0.1705556464 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
19 Hb_001269_470 0.1706511376 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
20 Hb_027298_010 0.1724362757 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_027298_030 Hb_027298_030 Hb_003181_060 Hb_003181_060 Hb_027298_030--Hb_003181_060 Hb_021079_010 Hb_021079_010 Hb_027298_030--Hb_021079_010 Hb_004317_030 Hb_004317_030 Hb_027298_030--Hb_004317_030 Hb_000510_080 Hb_000510_080 Hb_027298_030--Hb_000510_080 Hb_006836_030 Hb_006836_030 Hb_027298_030--Hb_006836_030 Hb_000723_340 Hb_000723_340 Hb_027298_030--Hb_000723_340 Hb_001269_470 Hb_001269_470 Hb_003181_060--Hb_001269_470 Hb_003181_060--Hb_021079_010 Hb_027298_010 Hb_027298_010 Hb_003181_060--Hb_027298_010 Hb_001711_120 Hb_001711_120 Hb_003181_060--Hb_001711_120 Hb_000392_550 Hb_000392_550 Hb_003181_060--Hb_000392_550 Hb_021079_010--Hb_000392_550 Hb_002876_020 Hb_002876_020 Hb_021079_010--Hb_002876_020 Hb_003106_100 Hb_003106_100 Hb_021079_010--Hb_003106_100 Hb_000210_060 Hb_000210_060 Hb_021079_010--Hb_000210_060 Hb_000032_370 Hb_000032_370 Hb_004317_030--Hb_000032_370 Hb_000510_030 Hb_000510_030 Hb_004317_030--Hb_000510_030 Hb_004317_030--Hb_000392_550 Hb_002045_060 Hb_002045_060 Hb_004317_030--Hb_002045_060 Hb_001369_790 Hb_001369_790 Hb_004317_030--Hb_001369_790 Hb_007894_050 Hb_007894_050 Hb_004317_030--Hb_007894_050 Hb_002900_110 Hb_002900_110 Hb_000510_080--Hb_002900_110 Hb_000510_080--Hb_000510_030 Hb_001277_030 Hb_001277_030 Hb_000510_080--Hb_001277_030 Hb_001898_050 Hb_001898_050 Hb_000510_080--Hb_001898_050 Hb_007199_020 Hb_007199_020 Hb_000510_080--Hb_007199_020 Hb_005276_040 Hb_005276_040 Hb_000510_080--Hb_005276_040 Hb_000317_420 Hb_000317_420 Hb_006836_030--Hb_000317_420 Hb_000012_110 Hb_000012_110 Hb_006836_030--Hb_000012_110 Hb_001975_040 Hb_001975_040 Hb_006836_030--Hb_001975_040 Hb_001975_030 Hb_001975_030 Hb_006836_030--Hb_001975_030 Hb_004007_110 Hb_004007_110 Hb_006836_030--Hb_004007_110 Hb_000175_190 Hb_000175_190 Hb_000723_340--Hb_000175_190 Hb_002374_300 Hb_002374_300 Hb_000723_340--Hb_002374_300 Hb_000723_340--Hb_007894_050 Hb_003126_130 Hb_003126_130 Hb_000723_340--Hb_003126_130 Hb_000723_340--Hb_003181_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.0765 22.6059 178.76 148.651 8.22139 10.2767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
111.03 226.367 43.0324 143.993 214.537

CAGE analysis