Hb_000723_340

Information

Type -
Description -
Location Contig723: 333190-337547
Sequence    

Annotation

kegg
ID rcu:RCOM_1355750
description carboxy-lyase, putative
nr
ID XP_012082366.1
description PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
swissprot
ID Q8L8B8
description Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 SV=1
trembl
ID A0A067KA04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16509 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55786: 334897-337491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_340 0.0 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
2 Hb_000175_190 0.1410624572 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
3 Hb_027298_030 0.1415338338 - - PREDICTED: histone H1-like [Jatropha curcas]
4 Hb_002374_300 0.1417645356 - - hypothetical protein JCGZ_12140 [Jatropha curcas]
5 Hb_007894_050 0.1493630984 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
6 Hb_003126_130 0.1651400982 - - inositol-1-monophosphatase family protein [Populus trichocarpa]
7 Hb_003181_060 0.165847532 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
8 Hb_001301_340 0.1728224603 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
9 Hb_000035_240 0.1731465984 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000008_370 0.1737001499 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
11 Hb_003462_160 0.1744074578 transcription factor TF Family: GNAT predicted protein [Arabidopsis lyrata subsp. lyrata]
12 Hb_001450_030 0.1750110771 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
13 Hb_154038_020 0.1757440331 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
14 Hb_021079_010 0.1775830384 - - PREDICTED: histone H2B-like [Populus euphratica]
15 Hb_004317_030 0.1788394304 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
16 Hb_000740_040 0.1791142277 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
17 Hb_068194_010 0.179357015 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
18 Hb_000718_040 0.1813811559 - - PREDICTED: lipase member N [Jatropha curcas]
19 Hb_001073_080 0.1817432906 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
20 Hb_000627_300 0.1823035914 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]

Gene co-expression network

sample Hb_000723_340 Hb_000723_340 Hb_000175_190 Hb_000175_190 Hb_000723_340--Hb_000175_190 Hb_027298_030 Hb_027298_030 Hb_000723_340--Hb_027298_030 Hb_002374_300 Hb_002374_300 Hb_000723_340--Hb_002374_300 Hb_007894_050 Hb_007894_050 Hb_000723_340--Hb_007894_050 Hb_003126_130 Hb_003126_130 Hb_000723_340--Hb_003126_130 Hb_003181_060 Hb_003181_060 Hb_000723_340--Hb_003181_060 Hb_000175_190--Hb_027298_030 Hb_017845_010 Hb_017845_010 Hb_000175_190--Hb_017845_010 Hb_002759_110 Hb_002759_110 Hb_000175_190--Hb_002759_110 Hb_001823_060 Hb_001823_060 Hb_000175_190--Hb_001823_060 Hb_097218_020 Hb_097218_020 Hb_000175_190--Hb_097218_020 Hb_027298_030--Hb_003181_060 Hb_021079_010 Hb_021079_010 Hb_027298_030--Hb_021079_010 Hb_004317_030 Hb_004317_030 Hb_027298_030--Hb_004317_030 Hb_000510_080 Hb_000510_080 Hb_027298_030--Hb_000510_080 Hb_006836_030 Hb_006836_030 Hb_027298_030--Hb_006836_030 Hb_001124_180 Hb_001124_180 Hb_002374_300--Hb_001124_180 Hb_000627_300 Hb_000627_300 Hb_002374_300--Hb_000627_300 Hb_000176_010 Hb_000176_010 Hb_002374_300--Hb_000176_010 Hb_005489_090 Hb_005489_090 Hb_002374_300--Hb_005489_090 Hb_004128_070 Hb_004128_070 Hb_002374_300--Hb_004128_070 Hb_009780_050 Hb_009780_050 Hb_002374_300--Hb_009780_050 Hb_001073_080 Hb_001073_080 Hb_007894_050--Hb_001073_080 Hb_001301_340 Hb_001301_340 Hb_007894_050--Hb_001301_340 Hb_007894_050--Hb_003126_130 Hb_002872_050 Hb_002872_050 Hb_007894_050--Hb_002872_050 Hb_000392_550 Hb_000392_550 Hb_007894_050--Hb_000392_550 Hb_001377_450 Hb_001377_450 Hb_007894_050--Hb_001377_450 Hb_003126_130--Hb_001377_450 Hb_003126_130--Hb_001073_080 Hb_002909_020 Hb_002909_020 Hb_003126_130--Hb_002909_020 Hb_001019_150 Hb_001019_150 Hb_003126_130--Hb_001019_150 Hb_000796_010 Hb_000796_010 Hb_003126_130--Hb_000796_010 Hb_001269_470 Hb_001269_470 Hb_003181_060--Hb_001269_470 Hb_003181_060--Hb_021079_010 Hb_027298_010 Hb_027298_010 Hb_003181_060--Hb_027298_010 Hb_001711_120 Hb_001711_120 Hb_003181_060--Hb_001711_120 Hb_003181_060--Hb_000392_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.163372 0.292132 3.60899 1.59863 0.179846 0.139377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.57115 3.34519 0.740326 1.08078 2.59675

CAGE analysis