Hb_003181_060

Information

Type -
Description -
Location Contig3181: 53090-58785
Sequence    

Annotation

kegg
ID rcu:RCOM_0000900
description triosephosphate isomerase, putative (EC:5.3.1.1)
nr
ID XP_012089190.1
description PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
swissprot
ID P48495
description Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1
trembl
ID A0A067LKT3
description Triosephosphate isomerase OS=Jatropha curcas GN=JCGZ_01454 PE=3 SV=1
Gene Ontology
ID GO:0005618
description triosephosphate cytosolic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33586: 52879-58716
cDNA
(Sanger)
(ID:Location)		 009_P20.ab1: 53091-58326 , 018_G15.ab1: 53091-56905 , 026_F03.ab1: 53143-58285 , 046_K08.ab1: 53042-56892 , 051_P14.ab1: 53092-58289

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003181_060 0.0 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
2 Hb_001269_470 0.0937209311 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
3 Hb_027298_030 0.0967973619 - - PREDICTED: histone H1-like [Jatropha curcas]
4 Hb_021079_010 0.1296195142 - - PREDICTED: histone H2B-like [Populus euphratica]
5 Hb_027298_010 0.1343303961 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001711_120 0.13570507 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
7 Hb_000392_550 0.1382775395 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_009780_050 0.1393073337 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
9 Hb_001322_230 0.1398505704 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
10 Hb_004317_030 0.1539217274 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
11 Hb_000510_030 0.1547355034 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
12 Hb_000012_110 0.1576472357 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
13 Hb_001450_030 0.1589593868 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
14 Hb_000176_010 0.1602364416 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
15 Hb_003602_060 0.1624676093 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
16 Hb_006836_030 0.1635115978 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
17 Hb_001408_060 0.1640844622 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
18 Hb_002053_010 0.1641600843 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
19 Hb_000032_370 0.1641931818 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
20 Hb_007632_170 0.1643795124 - - hypothetical protein JCGZ_01028 [Jatropha curcas]

Gene co-expression network

sample Hb_003181_060 Hb_003181_060 Hb_001269_470 Hb_001269_470 Hb_003181_060--Hb_001269_470 Hb_027298_030 Hb_027298_030 Hb_003181_060--Hb_027298_030 Hb_021079_010 Hb_021079_010 Hb_003181_060--Hb_021079_010 Hb_027298_010 Hb_027298_010 Hb_003181_060--Hb_027298_010 Hb_001711_120 Hb_001711_120 Hb_003181_060--Hb_001711_120 Hb_000392_550 Hb_000392_550 Hb_003181_060--Hb_000392_550 Hb_001269_470--Hb_001711_120 Hb_001269_470--Hb_027298_010 Hb_009780_050 Hb_009780_050 Hb_001269_470--Hb_009780_050 Hb_001322_230 Hb_001322_230 Hb_001269_470--Hb_001322_230 Hb_001373_130 Hb_001373_130 Hb_001269_470--Hb_001373_130 Hb_027298_030--Hb_021079_010 Hb_004317_030 Hb_004317_030 Hb_027298_030--Hb_004317_030 Hb_000510_080 Hb_000510_080 Hb_027298_030--Hb_000510_080 Hb_006836_030 Hb_006836_030 Hb_027298_030--Hb_006836_030 Hb_000723_340 Hb_000723_340 Hb_027298_030--Hb_000723_340 Hb_021079_010--Hb_000392_550 Hb_002876_020 Hb_002876_020 Hb_021079_010--Hb_002876_020 Hb_003106_100 Hb_003106_100 Hb_021079_010--Hb_003106_100 Hb_000210_060 Hb_000210_060 Hb_021079_010--Hb_000210_060 Hb_019762_050 Hb_019762_050 Hb_027298_010--Hb_019762_050 Hb_027298_010--Hb_000392_550 Hb_000032_370 Hb_000032_370 Hb_027298_010--Hb_000032_370 Hb_065525_120 Hb_065525_120 Hb_027298_010--Hb_065525_120 Hb_140627_010 Hb_140627_010 Hb_027298_010--Hb_140627_010 Hb_027298_010--Hb_009780_050 Hb_000510_030 Hb_000510_030 Hb_001711_120--Hb_000510_030 Hb_002053_010 Hb_002053_010 Hb_001711_120--Hb_002053_010 Hb_001629_090 Hb_001629_090 Hb_001711_120--Hb_001629_090 Hb_000983_070 Hb_000983_070 Hb_001711_120--Hb_000983_070 Hb_001711_120--Hb_000392_550 Hb_001369_790 Hb_001369_790 Hb_001711_120--Hb_001369_790 Hb_000392_550--Hb_000510_030 Hb_000392_550--Hb_001369_790 Hb_000392_550--Hb_000032_370 Hb_000392_550--Hb_004317_030 Hb_000035_480 Hb_000035_480 Hb_000392_550--Hb_000035_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.1653 43.6138 209.254 169.832 11.107 14.0262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.2357 282.236 41.8033 100.874 281.541

CAGE analysis