Hb_006836_030

Information

Type -
Description -
Location Contig6836: 37028-50921
Sequence    

Annotation

kegg
ID pop:POPTR_0006s02250g
description POPTRDRAFT_831772; OTU-like cysteine protease family protein
nr
ID XP_012081074.1
description PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
swissprot
ID Q54P70
description OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=3 SV=2
trembl
ID A0A067K5P8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17490 PE=4 SV=1
Gene Ontology
ID GO:0008233
description otu domain-containing protein ddb_g0284757

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53941: 37057-50841
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006836_030 0.0 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
2 Hb_000317_420 0.1097887847 - - PREDICTED: extradiol ring-cleavage dioxygenase [Jatropha curcas]
3 Hb_027298_030 0.1356569068 - - PREDICTED: histone H1-like [Jatropha curcas]
4 Hb_000012_110 0.1454994033 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
5 Hb_001975_040 0.148475551 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
6 Hb_001975_030 0.1511634328 - - 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]
7 Hb_004007_110 0.1554894666 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
8 Hb_000210_060 0.158115306 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
9 Hb_021079_010 0.1605641559 - - PREDICTED: histone H2B-like [Populus euphratica]
10 Hb_003181_060 0.1635115978 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
11 Hb_001510_020 0.1652581361 - - Diaminopimelate epimerase, putative [Ricinus communis]
12 Hb_007590_090 0.1683450072 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
13 Hb_011242_050 0.1729568667 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
14 Hb_015057_020 0.1730759638 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
15 Hb_001817_100 0.1733043061 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
16 Hb_000288_020 0.1742044832 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002486_020 0.1757193779 - - ATP binding protein, putative [Ricinus communis]
18 Hb_007441_240 0.1804838431 - - ethphon-induced protein [Hevea brasiliensis]
19 Hb_001898_050 0.180997279 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
20 Hb_002615_030 0.1813325411 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]

Gene co-expression network

sample Hb_006836_030 Hb_006836_030 Hb_000317_420 Hb_000317_420 Hb_006836_030--Hb_000317_420 Hb_027298_030 Hb_027298_030 Hb_006836_030--Hb_027298_030 Hb_000012_110 Hb_000012_110 Hb_006836_030--Hb_000012_110 Hb_001975_040 Hb_001975_040 Hb_006836_030--Hb_001975_040 Hb_001975_030 Hb_001975_030 Hb_006836_030--Hb_001975_030 Hb_004007_110 Hb_004007_110 Hb_006836_030--Hb_004007_110 Hb_007441_240 Hb_007441_240 Hb_000317_420--Hb_007441_240 Hb_000317_420--Hb_004007_110 Hb_000723_170 Hb_000723_170 Hb_000317_420--Hb_000723_170 Hb_000317_420--Hb_001975_040 Hb_158104_020 Hb_158104_020 Hb_000317_420--Hb_158104_020 Hb_003181_060 Hb_003181_060 Hb_027298_030--Hb_003181_060 Hb_021079_010 Hb_021079_010 Hb_027298_030--Hb_021079_010 Hb_004317_030 Hb_004317_030 Hb_027298_030--Hb_004317_030 Hb_000510_080 Hb_000510_080 Hb_027298_030--Hb_000510_080 Hb_000723_340 Hb_000723_340 Hb_027298_030--Hb_000723_340 Hb_000012_110--Hb_004007_110 Hb_001998_200 Hb_001998_200 Hb_000012_110--Hb_001998_200 Hb_002615_030 Hb_002615_030 Hb_000012_110--Hb_002615_030 Hb_007590_090 Hb_007590_090 Hb_000012_110--Hb_007590_090 Hb_003602_060 Hb_003602_060 Hb_000012_110--Hb_003602_060 Hb_015057_020 Hb_015057_020 Hb_000012_110--Hb_015057_020 Hb_001975_040--Hb_001975_030 Hb_002835_340 Hb_002835_340 Hb_001975_040--Hb_002835_340 Hb_001975_040--Hb_000012_110 Hb_002660_120 Hb_002660_120 Hb_001975_040--Hb_002660_120 Hb_001817_100 Hb_001817_100 Hb_001975_030--Hb_001817_100 Hb_001975_030--Hb_007590_090 Hb_001975_030--Hb_000012_110 Hb_001975_030--Hb_002615_030 Hb_001975_030--Hb_001998_200 Hb_000110_060 Hb_000110_060 Hb_001975_030--Hb_000110_060 Hb_004007_110--Hb_007590_090 Hb_002110_100 Hb_002110_100 Hb_004007_110--Hb_002110_100 Hb_004158_020 Hb_004158_020 Hb_004007_110--Hb_004158_020 Hb_028049_010 Hb_028049_010 Hb_004007_110--Hb_028049_010 Hb_012305_130 Hb_012305_130 Hb_004007_110--Hb_012305_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.208591 1.26387 5.53408 9.13824 0.405942 0.589355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.39023 8.88135 2.22772 6.44761 6.85079

CAGE analysis