Hb_000723_170

Information

Type -
Description -
Location Contig723: 173020-179820
Sequence    

Annotation

kegg
ID pop:POPTR_0016s11360g
description OTU-like cysteine protease family protein
nr
ID XP_012082394.1
description PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
swissprot
ID Q54P70
description OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=3 SV=2
trembl
ID U5GA91
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s12780g PE=4 SV=1
Gene Ontology
ID GO:0008233
description otu domain-containing protein ddb_g0284757-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000723_170 0.0 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
2 Hb_001510_020 0.1087575857 - - Diaminopimelate epimerase, putative [Ricinus communis]
3 Hb_003376_180 0.1120535665 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
4 Hb_000251_030 0.1213873965 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
5 Hb_003305_020 0.1287302995 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
6 Hb_000210_060 0.1289384225 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
7 Hb_000317_420 0.1313679004 - - PREDICTED: extradiol ring-cleavage dioxygenase [Jatropha curcas]
8 Hb_000649_140 0.1325838267 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
9 Hb_002477_290 0.1340095441 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
10 Hb_010560_050 0.1346116623 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
11 Hb_002660_170 0.1349487037 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
12 Hb_028487_170 0.1362057078 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
13 Hb_100147_010 0.136442808 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
14 Hb_015057_020 0.1365146609 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
15 Hb_004007_110 0.139063233 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
16 Hb_000684_520 0.1395809481 - - glutathione S-transferase L3-like [Jatropha curcas]
17 Hb_002631_180 0.141137835 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
18 Hb_002239_050 0.1413731766 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
19 Hb_000983_030 0.1418171153 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
20 Hb_000031_260 0.1419301151 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]

Gene co-expression network

sample Hb_000723_170 Hb_000723_170 Hb_001510_020 Hb_001510_020 Hb_000723_170--Hb_001510_020 Hb_003376_180 Hb_003376_180 Hb_000723_170--Hb_003376_180 Hb_000251_030 Hb_000251_030 Hb_000723_170--Hb_000251_030 Hb_003305_020 Hb_003305_020 Hb_000723_170--Hb_003305_020 Hb_000210_060 Hb_000210_060 Hb_000723_170--Hb_000210_060 Hb_000317_420 Hb_000317_420 Hb_000723_170--Hb_000317_420 Hb_000548_070 Hb_000548_070 Hb_001510_020--Hb_000548_070 Hb_001728_140 Hb_001728_140 Hb_001510_020--Hb_001728_140 Hb_002477_290 Hb_002477_290 Hb_001510_020--Hb_002477_290 Hb_000684_520 Hb_000684_520 Hb_001510_020--Hb_000684_520 Hb_001510_020--Hb_000210_060 Hb_001510_020--Hb_000251_030 Hb_007218_120 Hb_007218_120 Hb_003376_180--Hb_007218_120 Hb_000110_140 Hb_000110_140 Hb_003376_180--Hb_000110_140 Hb_003376_180--Hb_002477_290 Hb_005653_070 Hb_005653_070 Hb_003376_180--Hb_005653_070 Hb_002660_170 Hb_002660_170 Hb_003376_180--Hb_002660_170 Hb_001728_040 Hb_001728_040 Hb_003376_180--Hb_001728_040 Hb_000251_030--Hb_002477_290 Hb_000251_030--Hb_007218_120 Hb_000251_030--Hb_001728_140 Hb_000251_030--Hb_003376_180 Hb_006059_010 Hb_006059_010 Hb_000251_030--Hb_006059_010 Hb_000251_030--Hb_000548_070 Hb_001946_310 Hb_001946_310 Hb_003305_020--Hb_001946_310 Hb_012022_050 Hb_012022_050 Hb_003305_020--Hb_012022_050 Hb_003305_020--Hb_002660_170 Hb_001318_050 Hb_001318_050 Hb_003305_020--Hb_001318_050 Hb_010997_090 Hb_010997_090 Hb_003305_020--Hb_010997_090 Hb_000025_190 Hb_000025_190 Hb_003305_020--Hb_000025_190 Hb_015057_020 Hb_015057_020 Hb_000210_060--Hb_015057_020 Hb_168893_020 Hb_168893_020 Hb_000210_060--Hb_168893_020 Hb_000210_060--Hb_002477_290 Hb_001898_050 Hb_001898_050 Hb_000210_060--Hb_001898_050 Hb_005276_040 Hb_005276_040 Hb_000210_060--Hb_005276_040 Hb_006836_030 Hb_006836_030 Hb_000317_420--Hb_006836_030 Hb_007441_240 Hb_007441_240 Hb_000317_420--Hb_007441_240 Hb_004007_110 Hb_004007_110 Hb_000317_420--Hb_004007_110 Hb_001975_040 Hb_001975_040 Hb_000317_420--Hb_001975_040 Hb_158104_020 Hb_158104_020 Hb_000317_420--Hb_158104_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.25435 5.59221 4.29523 14.557 1.98996 1.79707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.83937 15.7759 7.39563 15.9694 10.6763

CAGE analysis