Hb_017845_010

Information

Type -
Description -
Location Contig17845: 119-1180
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017845_010 0.0 - - -
2 Hb_001823_060 0.1667262558 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
3 Hb_000116_360 0.1777468863 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
4 Hb_002613_010 0.1887280176 - - PREDICTED: copper chaperone for superoxide dismutase, chloroplastic/cytosolic [Jatropha curcas]
5 Hb_000723_340 0.19556085 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
6 Hb_007894_050 0.1959443603 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
7 Hb_000056_070 0.202474539 - - -
8 Hb_000175_190 0.2105006152 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
9 Hb_006059_020 0.2115802793 - - PREDICTED: uncharacterized protein LOC105648672 [Jatropha curcas]
10 Hb_006153_040 0.2141357909 - - hypothetical protein PRUPE_ppa014788mg [Prunus persica]
11 Hb_002872_050 0.2161376142 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
12 Hb_000208_180 0.2169185159 - - PREDICTED: histone H2B-like [Populus euphratica]
13 Hb_003126_130 0.2172854222 - - inositol-1-monophosphatase family protein [Populus trichocarpa]
14 Hb_000035_270 0.2218166405 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
15 Hb_000260_620 0.2223954043 - - Thermosensitive gluconokinase, putative [Ricinus communis]
16 Hb_003387_070 0.2232599722 - - Acyl-protein thioesterase, putative [Ricinus communis]
17 Hb_001019_150 0.2233139222 - - Acyl-protein thioesterase, putative [Ricinus communis]
18 Hb_000154_040 0.2260276333 - - hypothetical protein JCGZ_25602 [Jatropha curcas]
19 Hb_003349_030 0.2302879273 - - PREDICTED: uncharacterized protein LOC105628283 [Jatropha curcas]
20 Hb_004317_030 0.2308040183 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]

Gene co-expression network

sample Hb_017845_010 Hb_017845_010 Hb_001823_060 Hb_001823_060 Hb_017845_010--Hb_001823_060 Hb_000116_360 Hb_000116_360 Hb_017845_010--Hb_000116_360 Hb_002613_010 Hb_002613_010 Hb_017845_010--Hb_002613_010 Hb_000723_340 Hb_000723_340 Hb_017845_010--Hb_000723_340 Hb_007894_050 Hb_007894_050 Hb_017845_010--Hb_007894_050 Hb_000056_070 Hb_000056_070 Hb_017845_010--Hb_000056_070 Hb_001823_060--Hb_000056_070 Hb_003349_030 Hb_003349_030 Hb_001823_060--Hb_003349_030 Hb_019762_050 Hb_019762_050 Hb_001823_060--Hb_019762_050 Hb_000005_300 Hb_000005_300 Hb_001823_060--Hb_000005_300 Hb_001252_220 Hb_001252_220 Hb_001823_060--Hb_001252_220 Hb_010422_070 Hb_010422_070 Hb_000116_360--Hb_010422_070 Hb_000208_180 Hb_000208_180 Hb_000116_360--Hb_000208_180 Hb_000457_290 Hb_000457_290 Hb_000116_360--Hb_000457_290 Hb_004317_030 Hb_004317_030 Hb_000116_360--Hb_004317_030 Hb_000116_360--Hb_000056_070 Hb_000260_620 Hb_000260_620 Hb_000116_360--Hb_000260_620 Hb_002613_010--Hb_001823_060 Hb_001348_120 Hb_001348_120 Hb_002613_010--Hb_001348_120 Hb_001493_120 Hb_001493_120 Hb_002613_010--Hb_001493_120 Hb_000997_360 Hb_000997_360 Hb_002613_010--Hb_000997_360 Hb_003387_070 Hb_003387_070 Hb_002613_010--Hb_003387_070 Hb_000175_190 Hb_000175_190 Hb_000723_340--Hb_000175_190 Hb_027298_030 Hb_027298_030 Hb_000723_340--Hb_027298_030 Hb_002374_300 Hb_002374_300 Hb_000723_340--Hb_002374_300 Hb_000723_340--Hb_007894_050 Hb_003126_130 Hb_003126_130 Hb_000723_340--Hb_003126_130 Hb_003181_060 Hb_003181_060 Hb_000723_340--Hb_003181_060 Hb_001073_080 Hb_001073_080 Hb_007894_050--Hb_001073_080 Hb_001301_340 Hb_001301_340 Hb_007894_050--Hb_001301_340 Hb_007894_050--Hb_003126_130 Hb_002872_050 Hb_002872_050 Hb_007894_050--Hb_002872_050 Hb_000392_550 Hb_000392_550 Hb_007894_050--Hb_000392_550 Hb_001377_450 Hb_001377_450 Hb_007894_050--Hb_001377_450 Hb_000056_070--Hb_002872_050 Hb_001019_150 Hb_001019_150 Hb_000056_070--Hb_001019_150 Hb_003880_030 Hb_003880_030 Hb_000056_070--Hb_003880_030 Hb_003106_100 Hb_003106_100 Hb_000056_070--Hb_003106_100 Hb_001329_150 Hb_001329_150 Hb_000056_070--Hb_001329_150 Hb_003050_280 Hb_003050_280 Hb_000056_070--Hb_003050_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0961861 0 0.552852 0.343803 0.188398 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.915181 0.898726 0.28106 0.391152 0.616029

CAGE analysis