Hb_000208_180

Information

Type -
Description -
Location Contig208: 200476-200889
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03060g
description hypothetical protein
nr
ID XP_011031602.1
description PREDICTED: histone H2B-like [Populus euphratica]
swissprot
ID Q1S9I9
description Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3
trembl
ID U5G795
description Histone H2B OS=Populus trichocarpa GN=POPTR_0008s03060g PE=3 SV=1
Gene Ontology
ID GO:0000786
description probable histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21494: 200421-201115
cDNA
(Sanger)
(ID:Location)		 004_D17.ab1: 200429-201032 , 005_L22.ab1: 200421-201032 , 009_P08.ab1: 200425-201030 , 013_H03.ab1: 200421-201050 , 031_P04.ab1: 200421-201050 , 036_J07.ab1: 200421-201050 , 045_F07.ab1: 200827-201050

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000208_180 0.0 - - PREDICTED: histone H2B-like [Populus euphratica]
2 Hb_000260_620 0.0956217163 - - Thermosensitive gluconokinase, putative [Ricinus communis]
3 Hb_000056_070 0.1289032994 - - -
4 Hb_010422_070 0.1329398462 - - PREDICTED: UPF0483 protein CBG03338-like [Jatropha curcas]
5 Hb_002876_020 0.133703281 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
6 Hb_003106_100 0.1344344843 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
7 Hb_005054_260 0.1355055475 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
8 Hb_000116_360 0.1396599986 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
9 Hb_000457_290 0.139701908 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
10 Hb_004317_030 0.1402154919 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
11 Hb_000032_370 0.145233497 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
12 Hb_000771_060 0.1456413583 - - PREDICTED: spermine synthase [Jatropha curcas]
13 Hb_001979_020 0.1457763053 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
14 Hb_000739_140 0.1470898049 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
15 Hb_006738_020 0.1482923968 - - hypothetical protein VITISV_010510 [Vitis vinifera]
16 Hb_000428_060 0.1497191069 - - malate dehydrogenase, putative [Ricinus communis]
17 Hb_000072_200 0.1528638099 - - PREDICTED: myb-like protein X [Jatropha curcas]
18 Hb_021079_010 0.1540856581 - - PREDICTED: histone H2B-like [Populus euphratica]
19 Hb_019762_050 0.1553462359 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
20 Hb_009075_010 0.1561219348 - - 60S ribosomal protein L10B [Hevea brasiliensis]

Gene co-expression network

sample Hb_000208_180 Hb_000208_180 Hb_000260_620 Hb_000260_620 Hb_000208_180--Hb_000260_620 Hb_000056_070 Hb_000056_070 Hb_000208_180--Hb_000056_070 Hb_010422_070 Hb_010422_070 Hb_000208_180--Hb_010422_070 Hb_002876_020 Hb_002876_020 Hb_000208_180--Hb_002876_020 Hb_003106_100 Hb_003106_100 Hb_000208_180--Hb_003106_100 Hb_005054_260 Hb_005054_260 Hb_000208_180--Hb_005054_260 Hb_000771_060 Hb_000771_060 Hb_000260_620--Hb_000771_060 Hb_000260_620--Hb_010422_070 Hb_006153_040 Hb_006153_040 Hb_000260_620--Hb_006153_040 Hb_004317_030 Hb_004317_030 Hb_000260_620--Hb_004317_030 Hb_000116_360 Hb_000116_360 Hb_000260_620--Hb_000116_360 Hb_002872_050 Hb_002872_050 Hb_000056_070--Hb_002872_050 Hb_001019_150 Hb_001019_150 Hb_000056_070--Hb_001019_150 Hb_003880_030 Hb_003880_030 Hb_000056_070--Hb_003880_030 Hb_000056_070--Hb_003106_100 Hb_001329_150 Hb_001329_150 Hb_000056_070--Hb_001329_150 Hb_003050_280 Hb_003050_280 Hb_000056_070--Hb_003050_280 Hb_005167_020 Hb_005167_020 Hb_010422_070--Hb_005167_020 Hb_010422_070--Hb_004317_030 Hb_000032_370 Hb_000032_370 Hb_010422_070--Hb_000032_370 Hb_000510_030 Hb_000510_030 Hb_010422_070--Hb_000510_030 Hb_004128_070 Hb_004128_070 Hb_010422_070--Hb_004128_070 Hb_002045_060 Hb_002045_060 Hb_010422_070--Hb_002045_060 Hb_002876_020--Hb_003106_100 Hb_000649_140 Hb_000649_140 Hb_002876_020--Hb_000649_140 Hb_002876_020--Hb_001019_150 Hb_000428_060 Hb_000428_060 Hb_002876_020--Hb_000428_060 Hb_001353_010 Hb_001353_010 Hb_002876_020--Hb_001353_010 Hb_001242_080 Hb_001242_080 Hb_002876_020--Hb_001242_080 Hb_003106_100--Hb_000649_140 Hb_003106_100--Hb_001019_150 Hb_003106_100--Hb_000428_060 Hb_003106_100--Hb_001353_010 Hb_000465_070 Hb_000465_070 Hb_003106_100--Hb_000465_070 Hb_000739_140 Hb_000739_140 Hb_005054_260--Hb_000739_140 Hb_009075_010 Hb_009075_010 Hb_005054_260--Hb_009075_010 Hb_001979_020 Hb_001979_020 Hb_005054_260--Hb_001979_020 Hb_003020_150 Hb_003020_150 Hb_005054_260--Hb_003020_150 Hb_000384_120 Hb_000384_120 Hb_005054_260--Hb_000384_120 Hb_000163_050 Hb_000163_050 Hb_005054_260--Hb_000163_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.39 15.3914 151.983 177.61 11.5136 31.9084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
184.65 385.975 162.925 218.36 229.91

CAGE analysis