Hb_006153_040

Information

Type -
Description -
Location Contig6153: 42091-44933
Sequence    

Annotation

kegg
ID rcu:RCOM_0196180
description trehalose-6-phosphate synthase, putative (EC:3.1.3.12)
nr
ID XP_007210565.1
description hypothetical protein PRUPE_ppa014788mg [Prunus persica]
swissprot
ID Q9SUW0
description Probable trehalose-phosphate phosphatase G OS=Arabidopsis thaliana GN=TPPG PE=2 SV=1
trembl
ID B9T2V9
description Trehalose 6-phosphate phosphatase OS=Ricinus communis GN=RCOM_0196180 PE=3 SV=1
Gene Ontology
ID GO:0003824
description probable trehalose-phosphate phosphatase f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006153_040 0.0 - - hypothetical protein PRUPE_ppa014788mg [Prunus persica]
2 Hb_002045_060 0.1438862031 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
3 Hb_000260_620 0.1451552482 - - Thermosensitive gluconokinase, putative [Ricinus communis]
4 Hb_001059_150 0.149172192 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
5 Hb_001114_080 0.1534039245 - - hypothetical protein PRUPE_ppa019021mg, partial [Prunus persica]
6 Hb_000771_060 0.1579154527 - - PREDICTED: spermine synthase [Jatropha curcas]
7 Hb_001153_120 0.1620200431 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
8 Hb_004123_020 0.1637470225 - - amino acid binding protein, putative [Ricinus communis]
9 Hb_000796_010 0.163923445 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
10 Hb_000428_060 0.1651837963 - - malate dehydrogenase, putative [Ricinus communis]
11 Hb_007894_050 0.1656672558 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
12 Hb_000116_360 0.1657463552 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
13 Hb_011609_090 0.166307806 - - protein with unknown function [Ricinus communis]
14 Hb_004317_030 0.166544152 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
15 Hb_000032_370 0.1672457332 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
16 Hb_000008_400 0.1708972922 - - PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis]
17 Hb_010422_070 0.1733421021 - - PREDICTED: UPF0483 protein CBG03338-like [Jatropha curcas]
18 Hb_000377_150 0.1744086919 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
19 Hb_065525_120 0.1757561655 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
20 Hb_000457_290 0.1760700664 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_006153_040 Hb_006153_040 Hb_002045_060 Hb_002045_060 Hb_006153_040--Hb_002045_060 Hb_000260_620 Hb_000260_620 Hb_006153_040--Hb_000260_620 Hb_001059_150 Hb_001059_150 Hb_006153_040--Hb_001059_150 Hb_001114_080 Hb_001114_080 Hb_006153_040--Hb_001114_080 Hb_000771_060 Hb_000771_060 Hb_006153_040--Hb_000771_060 Hb_001153_120 Hb_001153_120 Hb_006153_040--Hb_001153_120 Hb_005276_040 Hb_005276_040 Hb_002045_060--Hb_005276_040 Hb_001892_070 Hb_001892_070 Hb_002045_060--Hb_001892_070 Hb_004123_020 Hb_004123_020 Hb_002045_060--Hb_004123_020 Hb_000032_370 Hb_000032_370 Hb_002045_060--Hb_000032_370 Hb_000428_060 Hb_000428_060 Hb_002045_060--Hb_000428_060 Hb_004317_030 Hb_004317_030 Hb_002045_060--Hb_004317_030 Hb_000208_180 Hb_000208_180 Hb_000260_620--Hb_000208_180 Hb_000260_620--Hb_000771_060 Hb_010422_070 Hb_010422_070 Hb_000260_620--Hb_010422_070 Hb_000260_620--Hb_004317_030 Hb_000116_360 Hb_000116_360 Hb_000260_620--Hb_000116_360 Hb_001059_150--Hb_001153_120 Hb_011671_460 Hb_011671_460 Hb_001059_150--Hb_011671_460 Hb_000934_190 Hb_000934_190 Hb_001059_150--Hb_000934_190 Hb_001059_150--Hb_002045_060 Hb_000377_150 Hb_000377_150 Hb_001059_150--Hb_000377_150 Hb_000419_070 Hb_000419_070 Hb_001059_150--Hb_000419_070 Hb_000796_010 Hb_000796_010 Hb_001114_080--Hb_000796_010 Hb_024074_010 Hb_024074_010 Hb_001114_080--Hb_024074_010 Hb_000742_280 Hb_000742_280 Hb_001114_080--Hb_000742_280 Hb_000331_430 Hb_000331_430 Hb_001114_080--Hb_000331_430 Hb_007894_050 Hb_007894_050 Hb_001114_080--Hb_007894_050 Hb_066720_010 Hb_066720_010 Hb_001114_080--Hb_066720_010 Hb_000815_290 Hb_000815_290 Hb_000771_060--Hb_000815_290 Hb_000771_060--Hb_000428_060 Hb_000008_400 Hb_000008_400 Hb_000771_060--Hb_000008_400 Hb_028049_010 Hb_028049_010 Hb_000771_060--Hb_028049_010 Hb_000739_140 Hb_000739_140 Hb_000771_060--Hb_000739_140 Hb_001016_100 Hb_001016_100 Hb_000771_060--Hb_001016_100 Hb_012244_010 Hb_012244_010 Hb_001153_120--Hb_012244_010 Hb_001153_120--Hb_002045_060 Hb_001153_120--Hb_000377_150 Hb_001153_120--Hb_000428_060 Hb_011861_100 Hb_011861_100 Hb_001153_120--Hb_011861_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0742002 0.0637644 0.333071 0.197874 0.0249066 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.311268 0.333946 0.335672 0.221914 0.28041

CAGE analysis