Hb_000260_620

Information

Type -
Description -
Location Contig260: 452044-453273
Sequence    

Annotation

kegg
ID rcu:RCOM_1324360
description Thermosensitive gluconokinase, putative (EC:2.7.1.12)
nr
ID XP_002520004.1
description Thermosensitive gluconokinase, putative [Ricinus communis]
swissprot
ID P39208
description Thermosensitive gluconokinase OS=Escherichia coli (strain K12) GN=idnK PE=3 SV=1
trembl
ID B9S1Y5
description Thermosensitive gluconokinase, putative OS=Ricinus communis GN=RCOM_1324360 PE=4 SV=1
Gene Ontology
ID GO:0016787
description probable gluconokinase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27037: 452065-454547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_620 0.0 - - Thermosensitive gluconokinase, putative [Ricinus communis]
2 Hb_000208_180 0.0956217163 - - PREDICTED: histone H2B-like [Populus euphratica]
3 Hb_000771_060 0.135598045 - - PREDICTED: spermine synthase [Jatropha curcas]
4 Hb_010422_070 0.1360644696 - - PREDICTED: UPF0483 protein CBG03338-like [Jatropha curcas]
5 Hb_006153_040 0.1451552482 - - hypothetical protein PRUPE_ppa014788mg [Prunus persica]
6 Hb_004317_030 0.1498155208 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
7 Hb_000116_360 0.1502075172 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
8 Hb_027298_030 0.1597714314 - - PREDICTED: histone H1-like [Jatropha curcas]
9 Hb_000032_370 0.1616887969 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
10 Hb_000428_060 0.1648110977 - - malate dehydrogenase, putative [Ricinus communis]
11 Hb_002045_060 0.1667111774 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
12 Hb_000008_400 0.1693785801 - - PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis]
13 Hb_002783_110 0.1739524338 - - Zeamatin precursor, putative [Ricinus communis]
14 Hb_005054_260 0.1749759513 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
15 Hb_007894_050 0.1761054389 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
16 Hb_000457_290 0.1774893862 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
17 Hb_000510_080 0.1800740162 - - hypothetical protein CICLE_v10021453mg [Citrus clementina]
18 Hb_000739_140 0.1853247144 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
19 Hb_001059_150 0.1853557667 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
20 Hb_000510_030 0.1857946056 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]

Gene co-expression network

sample Hb_000260_620 Hb_000260_620 Hb_000208_180 Hb_000208_180 Hb_000260_620--Hb_000208_180 Hb_000771_060 Hb_000771_060 Hb_000260_620--Hb_000771_060 Hb_010422_070 Hb_010422_070 Hb_000260_620--Hb_010422_070 Hb_006153_040 Hb_006153_040 Hb_000260_620--Hb_006153_040 Hb_004317_030 Hb_004317_030 Hb_000260_620--Hb_004317_030 Hb_000116_360 Hb_000116_360 Hb_000260_620--Hb_000116_360 Hb_000056_070 Hb_000056_070 Hb_000208_180--Hb_000056_070 Hb_000208_180--Hb_010422_070 Hb_002876_020 Hb_002876_020 Hb_000208_180--Hb_002876_020 Hb_003106_100 Hb_003106_100 Hb_000208_180--Hb_003106_100 Hb_005054_260 Hb_005054_260 Hb_000208_180--Hb_005054_260 Hb_000815_290 Hb_000815_290 Hb_000771_060--Hb_000815_290 Hb_000428_060 Hb_000428_060 Hb_000771_060--Hb_000428_060 Hb_000008_400 Hb_000008_400 Hb_000771_060--Hb_000008_400 Hb_028049_010 Hb_028049_010 Hb_000771_060--Hb_028049_010 Hb_000739_140 Hb_000739_140 Hb_000771_060--Hb_000739_140 Hb_001016_100 Hb_001016_100 Hb_000771_060--Hb_001016_100 Hb_005167_020 Hb_005167_020 Hb_010422_070--Hb_005167_020 Hb_010422_070--Hb_004317_030 Hb_000032_370 Hb_000032_370 Hb_010422_070--Hb_000032_370 Hb_000510_030 Hb_000510_030 Hb_010422_070--Hb_000510_030 Hb_004128_070 Hb_004128_070 Hb_010422_070--Hb_004128_070 Hb_002045_060 Hb_002045_060 Hb_010422_070--Hb_002045_060 Hb_006153_040--Hb_002045_060 Hb_001059_150 Hb_001059_150 Hb_006153_040--Hb_001059_150 Hb_001114_080 Hb_001114_080 Hb_006153_040--Hb_001114_080 Hb_006153_040--Hb_000771_060 Hb_001153_120 Hb_001153_120 Hb_006153_040--Hb_001153_120 Hb_004317_030--Hb_000032_370 Hb_004317_030--Hb_000510_030 Hb_000392_550 Hb_000392_550 Hb_004317_030--Hb_000392_550 Hb_004317_030--Hb_002045_060 Hb_001369_790 Hb_001369_790 Hb_004317_030--Hb_001369_790 Hb_007894_050 Hb_007894_050 Hb_004317_030--Hb_007894_050 Hb_000116_360--Hb_010422_070 Hb_000116_360--Hb_000208_180 Hb_000457_290 Hb_000457_290 Hb_000116_360--Hb_000457_290 Hb_000116_360--Hb_004317_030 Hb_000116_360--Hb_000056_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.589731 0.282847 3.73653 3.6187 0.120816 0.102375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.09785 6.14467 3.59412 4.55367 3.87668

CAGE analysis