Hb_000116_360

Information

Type -
Description -
Location Contig116: 316729-319885
Sequence    

Annotation

kegg
ID pop:POPTR_0007s08580g
description POPTRDRAFT_819930; hypothetical protein
nr
ID XP_011012074.1
description PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HH24
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s08580g PE=4 SV=1
Gene Ontology
ID GO:0009941
description localized to the inner membrane of the chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04877: 318067-319256
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_360 0.0 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
2 Hb_010422_070 0.1354358979 - - PREDICTED: UPF0483 protein CBG03338-like [Jatropha curcas]
3 Hb_000208_180 0.1396599986 - - PREDICTED: histone H2B-like [Populus euphratica]
4 Hb_000457_290 0.1463038594 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
5 Hb_004317_030 0.1498601334 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
6 Hb_000056_070 0.1501051184 - - -
7 Hb_000260_620 0.1502075172 - - Thermosensitive gluconokinase, putative [Ricinus communis]
8 Hb_019762_050 0.1528039349 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
9 Hb_000032_370 0.1531561429 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
10 Hb_004128_070 0.1626254274 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
11 Hb_006153_040 0.1657463552 - - hypothetical protein PRUPE_ppa014788mg [Prunus persica]
12 Hb_006738_020 0.1660268468 - - hypothetical protein VITISV_010510 [Vitis vinifera]
13 Hb_000377_150 0.1712222638 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
14 Hb_000510_030 0.1714943926 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
15 Hb_000428_060 0.172293309 - - malate dehydrogenase, putative [Ricinus communis]
16 Hb_001059_150 0.174374948 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
17 Hb_027298_010 0.1766448698 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002876_020 0.1767298553 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
19 Hb_017845_010 0.1777468863 - - -
20 Hb_001976_040 0.1788165121 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_360 Hb_000116_360 Hb_010422_070 Hb_010422_070 Hb_000116_360--Hb_010422_070 Hb_000208_180 Hb_000208_180 Hb_000116_360--Hb_000208_180 Hb_000457_290 Hb_000457_290 Hb_000116_360--Hb_000457_290 Hb_004317_030 Hb_004317_030 Hb_000116_360--Hb_004317_030 Hb_000056_070 Hb_000056_070 Hb_000116_360--Hb_000056_070 Hb_000260_620 Hb_000260_620 Hb_000116_360--Hb_000260_620 Hb_005167_020 Hb_005167_020 Hb_010422_070--Hb_005167_020 Hb_010422_070--Hb_004317_030 Hb_000032_370 Hb_000032_370 Hb_010422_070--Hb_000032_370 Hb_000510_030 Hb_000510_030 Hb_010422_070--Hb_000510_030 Hb_004128_070 Hb_004128_070 Hb_010422_070--Hb_004128_070 Hb_002045_060 Hb_002045_060 Hb_010422_070--Hb_002045_060 Hb_000208_180--Hb_000260_620 Hb_000208_180--Hb_000056_070 Hb_000208_180--Hb_010422_070 Hb_002876_020 Hb_002876_020 Hb_000208_180--Hb_002876_020 Hb_003106_100 Hb_003106_100 Hb_000208_180--Hb_003106_100 Hb_005054_260 Hb_005054_260 Hb_000208_180--Hb_005054_260 Hb_000465_070 Hb_000465_070 Hb_000457_290--Hb_000465_070 Hb_000035_480 Hb_000035_480 Hb_000457_290--Hb_000035_480 Hb_140627_010 Hb_140627_010 Hb_000457_290--Hb_140627_010 Hb_000403_070 Hb_000403_070 Hb_000457_290--Hb_000403_070 Hb_001892_070 Hb_001892_070 Hb_000457_290--Hb_001892_070 Hb_002232_060 Hb_002232_060 Hb_000457_290--Hb_002232_060 Hb_004317_030--Hb_000032_370 Hb_004317_030--Hb_000510_030 Hb_000392_550 Hb_000392_550 Hb_004317_030--Hb_000392_550 Hb_004317_030--Hb_002045_060 Hb_001369_790 Hb_001369_790 Hb_004317_030--Hb_001369_790 Hb_007894_050 Hb_007894_050 Hb_004317_030--Hb_007894_050 Hb_002872_050 Hb_002872_050 Hb_000056_070--Hb_002872_050 Hb_001019_150 Hb_001019_150 Hb_000056_070--Hb_001019_150 Hb_003880_030 Hb_003880_030 Hb_000056_070--Hb_003880_030 Hb_000056_070--Hb_003106_100 Hb_001329_150 Hb_001329_150 Hb_000056_070--Hb_001329_150 Hb_003050_280 Hb_003050_280 Hb_000056_070--Hb_003050_280 Hb_000771_060 Hb_000771_060 Hb_000260_620--Hb_000771_060 Hb_000260_620--Hb_010422_070 Hb_006153_040 Hb_006153_040 Hb_000260_620--Hb_006153_040 Hb_000260_620--Hb_004317_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.69569 1.24911 7.15065 10.8096 1.93779 0.152451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6153 20.9132 10.7305 11.197 20.3968

CAGE analysis