Hb_002613_010

Information

Type -
Description -
Location Contig2613: 12470-17129
Sequence    

Annotation

kegg
ID rcu:RCOM_1682180
description superoxide dismutase copper chaperone, putative
nr
ID XP_012087054.1
description PREDICTED: copper chaperone for superoxide dismutase, chloroplastic/cytosolic [Jatropha curcas]
swissprot
ID Q9LD47
description Copper chaperone for superoxide dismutase, chloroplastic/cytosolic OS=Arabidopsis thaliana GN=CCS PE=1 SV=1
trembl
ID A0A067JZY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20716 PE=4 SV=1
Gene Ontology
ID GO:0046872
description copper chaperone for superoxide chloroplastic cytosolic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002613_010 0.0 - - PREDICTED: copper chaperone for superoxide dismutase, chloroplastic/cytosolic [Jatropha curcas]
2 Hb_017845_010 0.1887280176 - - -
3 Hb_001823_060 0.2381020625 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
4 Hb_001348_120 0.2504874712 - - Phloem protein 2-B10, putative [Theobroma cacao]
5 Hb_001493_120 0.256835971 - - -
6 Hb_000997_360 0.2599837272 - - hypothetical protein AALP_AAs70636U000100 [Arabis alpina]
7 Hb_003387_070 0.2632268317 - - Acyl-protein thioesterase, putative [Ricinus communis]
8 Hb_004128_070 0.2656050146 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
9 Hb_003097_060 0.266834243 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
10 Hb_001153_020 0.2673679584 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
11 Hb_000116_360 0.2681040531 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
12 Hb_000429_090 0.2681788023 - - PREDICTED: carboxyl-terminal-processing peptidase 3, chloroplastic [Jatropha curcas]
13 Hb_023313_010 0.2701627113 - - PREDICTED: linolenate hydroperoxide lyase, chloroplastic [Jatropha curcas]
14 Hb_000096_150 0.2713197894 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
15 Hb_001136_060 0.2739280262 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
16 Hb_002260_030 0.2743413825 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
17 Hb_011671_460 0.2753588965 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
18 Hb_000056_070 0.2765257041 - - -
19 Hb_002918_050 0.2779977903 transcription factor TF Family: SBP PREDICTED: mitochondrial arginine transporter BAC1-like isoform X1 [Jatropha curcas]
20 Hb_021443_080 0.2805706062 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]

Gene co-expression network

sample Hb_002613_010 Hb_002613_010 Hb_017845_010 Hb_017845_010 Hb_002613_010--Hb_017845_010 Hb_001823_060 Hb_001823_060 Hb_002613_010--Hb_001823_060 Hb_001348_120 Hb_001348_120 Hb_002613_010--Hb_001348_120 Hb_001493_120 Hb_001493_120 Hb_002613_010--Hb_001493_120 Hb_000997_360 Hb_000997_360 Hb_002613_010--Hb_000997_360 Hb_003387_070 Hb_003387_070 Hb_002613_010--Hb_003387_070 Hb_017845_010--Hb_001823_060 Hb_000116_360 Hb_000116_360 Hb_017845_010--Hb_000116_360 Hb_000723_340 Hb_000723_340 Hb_017845_010--Hb_000723_340 Hb_007894_050 Hb_007894_050 Hb_017845_010--Hb_007894_050 Hb_000056_070 Hb_000056_070 Hb_017845_010--Hb_000056_070 Hb_001823_060--Hb_000056_070 Hb_003349_030 Hb_003349_030 Hb_001823_060--Hb_003349_030 Hb_019762_050 Hb_019762_050 Hb_001823_060--Hb_019762_050 Hb_000005_300 Hb_000005_300 Hb_001823_060--Hb_000005_300 Hb_001252_220 Hb_001252_220 Hb_001823_060--Hb_001252_220 Hb_000163_210 Hb_000163_210 Hb_001348_120--Hb_000163_210 Hb_000083_090 Hb_000083_090 Hb_001348_120--Hb_000083_090 Hb_000084_320 Hb_000084_320 Hb_001348_120--Hb_000084_320 Hb_000260_200 Hb_000260_200 Hb_001348_120--Hb_000260_200 Hb_000836_130 Hb_000836_130 Hb_001348_120--Hb_000836_130 Hb_000178_120 Hb_000178_120 Hb_001348_120--Hb_000178_120 Hb_000574_460 Hb_000574_460 Hb_001493_120--Hb_000574_460 Hb_000429_090 Hb_000429_090 Hb_001493_120--Hb_000429_090 Hb_002809_150 Hb_002809_150 Hb_001493_120--Hb_002809_150 Hb_091194_010 Hb_091194_010 Hb_001493_120--Hb_091194_010 Hb_001136_060 Hb_001136_060 Hb_001493_120--Hb_001136_060 Hb_001284_010 Hb_001284_010 Hb_001493_120--Hb_001284_010 Hb_000125_210 Hb_000125_210 Hb_000997_360--Hb_000125_210 Hb_000635_210 Hb_000635_210 Hb_000997_360--Hb_000635_210 Hb_001218_040 Hb_001218_040 Hb_000997_360--Hb_001218_040 Hb_021443_080 Hb_021443_080 Hb_000997_360--Hb_021443_080 Hb_001775_110 Hb_001775_110 Hb_000997_360--Hb_001775_110 Hb_011512_040 Hb_011512_040 Hb_000997_360--Hb_011512_040 Hb_027459_020 Hb_027459_020 Hb_003387_070--Hb_027459_020 Hb_001728_060 Hb_001728_060 Hb_003387_070--Hb_001728_060 Hb_017225_020 Hb_017225_020 Hb_003387_070--Hb_017225_020 Hb_002613_020 Hb_002613_020 Hb_003387_070--Hb_002613_020 Hb_027654_050 Hb_027654_050 Hb_003387_070--Hb_027654_050 Hb_000159_130 Hb_000159_130 Hb_003387_070--Hb_000159_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0523002 0.0362667 0.0427951 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.156914 0.0822729 0.0755888 0.0331065 0.0839995

CAGE analysis