Hb_001284_010

Information

Type -
Description -
Location Contig1284: 11574-14036
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDO79729.1
description hypothetical protein CISIN_1g0279981mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067GJD9
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0279981mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description coiled-coil domain-containing protein 25-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08702: 13722-24385
cDNA
(Sanger)
(ID:Location)		 016_K15.ab1: 13764-24385

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001284_010 0.0 - - hypothetical protein CISIN_1g0279981mg, partial [Citrus sinensis]
2 Hb_042202_050 0.1280556132 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
3 Hb_019113_020 0.1537725434 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
4 Hb_003050_250 0.155045128 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
5 Hb_000337_050 0.1613150775 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
6 Hb_000052_020 0.1651750373 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
7 Hb_001953_080 0.1661000789 - - pseudouridine synthase family protein, partial [Manihot esculenta]
8 Hb_000300_660 0.1685331222 - - unknown [Glycine max]
9 Hb_001491_010 0.168551122 - - PREDICTED: uncharacterized protein LOC105649805 [Jatropha curcas]
10 Hb_001240_010 0.1694626541 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
11 Hb_003734_110 0.1738489486 - - PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Jatropha curcas]
12 Hb_004125_040 0.1738983402 - - -
13 Hb_000289_110 0.1739077271 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
14 Hb_003020_260 0.1742059468 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
15 Hb_000159_130 0.176540174 - - RNA binding protein, putative [Ricinus communis]
16 Hb_001728_060 0.1765923806 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
17 Hb_161175_010 0.176866275 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
18 Hb_001006_020 0.1808763525 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
19 Hb_000403_070 0.1844917961 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000156_210 0.1846858675 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]

Gene co-expression network

sample Hb_001284_010 Hb_001284_010 Hb_042202_050 Hb_042202_050 Hb_001284_010--Hb_042202_050 Hb_019113_020 Hb_019113_020 Hb_001284_010--Hb_019113_020 Hb_003050_250 Hb_003050_250 Hb_001284_010--Hb_003050_250 Hb_000337_050 Hb_000337_050 Hb_001284_010--Hb_000337_050 Hb_000052_020 Hb_000052_020 Hb_001284_010--Hb_000052_020 Hb_001953_080 Hb_001953_080 Hb_001284_010--Hb_001953_080 Hb_042202_050--Hb_000052_020 Hb_000156_210 Hb_000156_210 Hb_042202_050--Hb_000156_210 Hb_006738_020 Hb_006738_020 Hb_042202_050--Hb_006738_020 Hb_000997_360 Hb_000997_360 Hb_042202_050--Hb_000997_360 Hb_146680_010 Hb_146680_010 Hb_042202_050--Hb_146680_010 Hb_019113_020--Hb_003050_250 Hb_161175_010 Hb_161175_010 Hb_019113_020--Hb_161175_010 Hb_002503_020 Hb_002503_020 Hb_019113_020--Hb_002503_020 Hb_000125_210 Hb_000125_210 Hb_019113_020--Hb_000125_210 Hb_004125_040 Hb_004125_040 Hb_019113_020--Hb_004125_040 Hb_000318_160 Hb_000318_160 Hb_019113_020--Hb_000318_160 Hb_003050_250--Hb_004125_040 Hb_001575_060 Hb_001575_060 Hb_003050_250--Hb_001575_060 Hb_001240_010 Hb_001240_010 Hb_003050_250--Hb_001240_010 Hb_001728_060 Hb_001728_060 Hb_003050_250--Hb_001728_060 Hb_000403_070 Hb_000403_070 Hb_003050_250--Hb_000403_070 Hb_000289_110 Hb_000289_110 Hb_000337_050--Hb_000289_110 Hb_018133_090 Hb_018133_090 Hb_000337_050--Hb_018133_090 Hb_003086_080 Hb_003086_080 Hb_000337_050--Hb_003086_080 Hb_001366_180 Hb_001366_180 Hb_000337_050--Hb_001366_180 Hb_005144_050 Hb_005144_050 Hb_000337_050--Hb_005144_050 Hb_003020_260 Hb_003020_260 Hb_000337_050--Hb_003020_260 Hb_002918_050 Hb_002918_050 Hb_000052_020--Hb_002918_050 Hb_003734_110 Hb_003734_110 Hb_000052_020--Hb_003734_110 Hb_007747_210 Hb_007747_210 Hb_000052_020--Hb_007747_210 Hb_000052_020--Hb_000997_360 Hb_011249_020 Hb_011249_020 Hb_001953_080--Hb_011249_020 Hb_001953_080--Hb_003020_260 Hb_001307_030 Hb_001307_030 Hb_001953_080--Hb_001307_030 Hb_000297_120 Hb_000297_120 Hb_001953_080--Hb_000297_120 Hb_025098_010 Hb_025098_010 Hb_001953_080--Hb_025098_010 Hb_000649_140 Hb_000649_140 Hb_001953_080--Hb_000649_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.768529 0.696035 0.719607 2.76596 1.09198 2.84579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.05895 6.31709 4.83279 2.11274 9.43783

CAGE analysis