Hb_146680_010

Information

Type -
Description -
Location Contig146680: 85-401
Sequence    

Annotation

kegg
ID pop:POPTR_0009s09740g
description POPTRDRAFT_767640; UMUC-like DNA repair family protein
nr
ID KDP45926.1
description hypothetical protein JCGZ_15486 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15486 PE=4 SV=1
Gene Ontology
ID GO:0000287
description dna repair protein rev1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_146680_010 0.0 - - hypothetical protein JCGZ_15486 [Jatropha curcas]
2 Hb_079312_010 0.1167384646 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011512_040 0.1214941873 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
4 Hb_011457_050 0.1226706793 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
5 Hb_004324_270 0.1243820327 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
6 Hb_005446_010 0.1253218185 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]
7 Hb_002232_060 0.1260171679 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
8 Hb_000403_070 0.1300658158 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000853_190 0.1308317399 - - mitochondrial carrier protein, putative [Ricinus communis]
10 Hb_012423_030 0.130959806 - - PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_003768_030 0.132681982 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
12 Hb_000465_070 0.1343474086 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
13 Hb_007037_020 0.1348699278 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
14 Hb_000457_290 0.1360574079 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
15 Hb_000673_020 0.1375129844 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
16 Hb_005162_060 0.1376205353 - - PREDICTED: putative septum site-determining protein minD homolog, chloroplastic [Jatropha curcas]
17 Hb_000327_060 0.1376542407 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
18 Hb_002408_020 0.1379772662 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
19 Hb_019113_020 0.1404926711 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
20 Hb_015183_060 0.1405970361 - - hypothetical protein JCGZ_06621 [Jatropha curcas]

Gene co-expression network

sample Hb_146680_010 Hb_146680_010 Hb_079312_010 Hb_079312_010 Hb_146680_010--Hb_079312_010 Hb_011512_040 Hb_011512_040 Hb_146680_010--Hb_011512_040 Hb_011457_050 Hb_011457_050 Hb_146680_010--Hb_011457_050 Hb_004324_270 Hb_004324_270 Hb_146680_010--Hb_004324_270 Hb_005446_010 Hb_005446_010 Hb_146680_010--Hb_005446_010 Hb_002232_060 Hb_002232_060 Hb_146680_010--Hb_002232_060 Hb_009803_050 Hb_009803_050 Hb_079312_010--Hb_009803_050 Hb_012423_030 Hb_012423_030 Hb_079312_010--Hb_012423_030 Hb_003020_220 Hb_003020_220 Hb_079312_010--Hb_003020_220 Hb_003688_150 Hb_003688_150 Hb_079312_010--Hb_003688_150 Hb_003768_030 Hb_003768_030 Hb_079312_010--Hb_003768_030 Hb_000603_080 Hb_000603_080 Hb_079312_010--Hb_000603_080 Hb_017225_020 Hb_017225_020 Hb_011512_040--Hb_017225_020 Hb_011512_040--Hb_005446_010 Hb_000853_190 Hb_000853_190 Hb_011512_040--Hb_000853_190 Hb_000419_070 Hb_000419_070 Hb_011512_040--Hb_000419_070 Hb_003849_150 Hb_003849_150 Hb_011512_040--Hb_003849_150 Hb_010883_050 Hb_010883_050 Hb_011512_040--Hb_010883_050 Hb_011457_050--Hb_004324_270 Hb_002408_020 Hb_002408_020 Hb_011457_050--Hb_002408_020 Hb_011457_050--Hb_003768_030 Hb_000061_210 Hb_000061_210 Hb_011457_050--Hb_000061_210 Hb_000566_120 Hb_000566_120 Hb_011457_050--Hb_000566_120 Hb_002183_060 Hb_002183_060 Hb_011457_050--Hb_002183_060 Hb_000046_050 Hb_000046_050 Hb_004324_270--Hb_000046_050 Hb_004324_270--Hb_005446_010 Hb_004324_270--Hb_002408_020 Hb_004324_270--Hb_003768_030 Hb_004324_270--Hb_002183_060 Hb_005446_010--Hb_017225_020 Hb_000827_050 Hb_000827_050 Hb_005446_010--Hb_000827_050 Hb_000327_060 Hb_000327_060 Hb_005446_010--Hb_000327_060 Hb_005446_010--Hb_003768_030 Hb_001979_020 Hb_001979_020 Hb_002232_060--Hb_001979_020 Hb_005843_140 Hb_005843_140 Hb_002232_060--Hb_005843_140 Hb_000072_200 Hb_000072_200 Hb_002232_060--Hb_000072_200 Hb_003020_150 Hb_003020_150 Hb_002232_060--Hb_003020_150 Hb_000465_070 Hb_000465_070 Hb_002232_060--Hb_000465_070 Hb_006198_070 Hb_006198_070 Hb_002232_060--Hb_006198_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.58562 2.20287 2.93608 2.43809 3.13552 1.17952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.4971 9.17974 7.09734 3.83118 7.59211

CAGE analysis