Hb_003734_110

Information

Type -
Description -
Location Contig3734: 107060-110540
Sequence    

Annotation

kegg
ID rcu:RCOM_0517680
description Thiol:disulfide interchange protein dsbD precursor, putative
nr
ID XP_012070656.1
description PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Jatropha curcas]
swissprot
ID Q2QY07
description Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 OS=Oryza sativa subsp. japonica GN=CCDA2 PE=3 SV=1
trembl
ID A0A067L4B6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00701 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cytochrome c-type biogenesis ccda-like chloroplastic protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38175: 107127-110501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003734_110 0.0 - - PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Jatropha curcas]
2 Hb_007747_210 0.1290315263 - - unnamed protein product [Vitis vinifera]
3 Hb_001439_060 0.1349784813 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
4 Hb_011386_020 0.143972021 - - unnamed protein product [Vitis vinifera]
5 Hb_000052_020 0.1440286592 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
6 Hb_000289_110 0.1473489264 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
7 Hb_001951_180 0.1479150433 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_000160_320 0.1487916555 - - hypothetical protein POPTR_0004s08730g [Populus trichocarpa]
9 Hb_003544_010 0.1499957576 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_000788_020 0.1531232132 - - PREDICTED: uncharacterized protein LOC105629709 isoform X1 [Jatropha curcas]
11 Hb_003467_030 0.1531972321 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
12 Hb_000337_050 0.1537252228 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
13 Hb_004346_030 0.1552592754 - - sucrose phosphate phosphatase, putative [Ricinus communis]
14 Hb_015941_020 0.1567852944 - - -
15 Hb_002918_050 0.1574741196 transcription factor TF Family: SBP PREDICTED: mitochondrial arginine transporter BAC1-like isoform X1 [Jatropha curcas]
16 Hb_002304_070 0.1598117861 - - -
17 Hb_002276_020 0.1608137458 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
18 Hb_000120_290 0.1616684225 - - PREDICTED: N-acylphosphatidylethanolamine synthase isoform X1 [Jatropha curcas]
19 Hb_000928_010 0.1640591994 - - Cell division protein ftsZ, putative [Ricinus communis]
20 Hb_000215_070 0.1646811483 - - PREDICTED: uncharacterized protein LOC105119782 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_003734_110 Hb_003734_110 Hb_007747_210 Hb_007747_210 Hb_003734_110--Hb_007747_210 Hb_001439_060 Hb_001439_060 Hb_003734_110--Hb_001439_060 Hb_011386_020 Hb_011386_020 Hb_003734_110--Hb_011386_020 Hb_000052_020 Hb_000052_020 Hb_003734_110--Hb_000052_020 Hb_000289_110 Hb_000289_110 Hb_003734_110--Hb_000289_110 Hb_001951_180 Hb_001951_180 Hb_003734_110--Hb_001951_180 Hb_042202_030 Hb_042202_030 Hb_007747_210--Hb_042202_030 Hb_079312_010 Hb_079312_010 Hb_007747_210--Hb_079312_010 Hb_005237_050 Hb_005237_050 Hb_007747_210--Hb_005237_050 Hb_009455_020 Hb_009455_020 Hb_007747_210--Hb_009455_020 Hb_000215_070 Hb_000215_070 Hb_007747_210--Hb_000215_070 Hb_003020_220 Hb_003020_220 Hb_007747_210--Hb_003020_220 Hb_018133_090 Hb_018133_090 Hb_001439_060--Hb_018133_090 Hb_000861_020 Hb_000861_020 Hb_001439_060--Hb_000861_020 Hb_001491_010 Hb_001491_010 Hb_001439_060--Hb_001491_010 Hb_015941_020 Hb_015941_020 Hb_001439_060--Hb_015941_020 Hb_012760_190 Hb_012760_190 Hb_001439_060--Hb_012760_190 Hb_000337_050 Hb_000337_050 Hb_001439_060--Hb_000337_050 Hb_003544_010 Hb_003544_010 Hb_011386_020--Hb_003544_010 Hb_003467_030 Hb_003467_030 Hb_011386_020--Hb_003467_030 Hb_003994_110 Hb_003994_110 Hb_011386_020--Hb_003994_110 Hb_006274_050 Hb_006274_050 Hb_011386_020--Hb_006274_050 Hb_011386_020--Hb_000337_050 Hb_000019_200 Hb_000019_200 Hb_011386_020--Hb_000019_200 Hb_002918_050 Hb_002918_050 Hb_000052_020--Hb_002918_050 Hb_042202_050 Hb_042202_050 Hb_000052_020--Hb_042202_050 Hb_000052_020--Hb_007747_210 Hb_001284_010 Hb_001284_010 Hb_000052_020--Hb_001284_010 Hb_000997_360 Hb_000997_360 Hb_000052_020--Hb_000997_360 Hb_001006_020 Hb_001006_020 Hb_000289_110--Hb_001006_020 Hb_001366_180 Hb_001366_180 Hb_000289_110--Hb_001366_180 Hb_002811_130 Hb_002811_130 Hb_000289_110--Hb_002811_130 Hb_005144_050 Hb_005144_050 Hb_000289_110--Hb_005144_050 Hb_002014_030 Hb_002014_030 Hb_000289_110--Hb_002014_030 Hb_000289_110--Hb_000337_050 Hb_002276_020 Hb_002276_020 Hb_001951_180--Hb_002276_020 Hb_036790_080 Hb_036790_080 Hb_001951_180--Hb_036790_080 Hb_011316_090 Hb_011316_090 Hb_001951_180--Hb_011316_090 Hb_005253_030 Hb_005253_030 Hb_001951_180--Hb_005253_030 Hb_000261_060 Hb_000261_060 Hb_001951_180--Hb_000261_060 Hb_153533_010 Hb_153533_010 Hb_001951_180--Hb_153533_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.77243 1.71476 2.23912 2.60027 2.42848 4.07592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9389 4.35471 6.75693 3.92393 12.231

CAGE analysis